PANgenome with Annotations, COre identification, Tree and corresponding Alignments
active 2023-09-02 → 2026-01-07 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 859 days from 2023-09-02 to 2026-01-07. Pushes: 3 total, peak 2 in a day. Pull requests: 0 total, peak 0 in a day. Issues: 15 total, peak 2 in a day. Comments: 16 total, peak 4 in a day. Stars: 19 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| asetGem | 13 | 3 | 0 | 7 |
| AlperYurtseven | 4 | 0 | 0 | 2 |
| sujeetpowar | 3 | 0 | 0 | 1 |
| octolis | 2 | 0 | 0 | 1 |
| aperrin | 2 | 0 | 0 | 2 |
| RaphaelRaphael | 2 | 0 | 0 | 0 |
| JasmineGamblin | 2 | 0 | 0 | 2 |
| macklor | 1 | 0 | 0 | 0 |
| rdenise | 1 | 0 | 0 | 0 |
| lear-711 | 1 | 0 | 0 | 0 |
| ASUQ | 1 | 0 | 0 | 0 |
| asershova | 1 | 0 | 0 | 0 |
| cachapuz2001 | 1 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#52cachapuz20012025-11-27 09:38How do I override the MinHash QC to keep all my samples?
- Issue#51macklor2025-03-22 15:17Prodigal annotation - skipping genomes
- Issue#50RaphaelRaphael2024-11-14 19:46panacota prepare is runing mash distance twice
- Issue#49RaphaelRaphael2024-11-07 21:34pangenome arguments and temporary file
- Issue#46asetGem2024-07-09 14:53Could not determine version of cmpress - please install version 1.1 or higher
- Issue#48ASUQ2024-05-14 07:01Conda installation conflict
- Issue comment#46aperrin2024-04-29 15:04Could not determine version of cmpress - please install version 1.1 or higher
- Issue comment#47asetGem2024-04-29 08:02ERROR ERROR: Your list file 'Examples/input_files/list_genomes.lst' does not exist. Please provide a list file.
- Issue#47asershova2024-04-26 12:07ERROR ERROR: Your list file 'Examples/input_files/list_genomes.lst' does not exist. Please provide a list file.
- Issue#46octolis2024-03-04 15:04Could not determine version of cmpress - please install version 1.1 or higher
- Issue comment#45asetGem2024-02-19 15:28[Enhancement] using bakta instead of prokka
- Issue#45rdenise2024-02-12 17:50[Enhancement] using bakta instead of prokka
- Issue comment#44AlperYurtseven2023-12-11 15:38PanACoTA align There is not any protein for genome X
- Issue#44AlperYurtseven2023-12-11 15:38PanACoTA align There is not any protein for genome X
- Issue comment#44asetGem2023-12-11 15:18PanACoTA align There is not any protein for genome X
- Issue comment#44AlperYurtseven2023-12-11 14:24PanACoTA align There is not any protein for genome X
- Issue comment#44asetGem2023-12-11 14:05PanACoTA align There is not any protein for genome X
- Issue#44AlperYurtseven2023-12-11 13:21PanACoTA align There is not any protein for genome X
- Issue#43sujeetpowar2023-12-06 08:25>mash sketch error
- Issue comment#43sujeetpowar2023-12-06 03:24>mash sketch error
- Issue comment#43asetGem2023-12-05 13:47>mash sketch error
- Issue#43sujeetpowar2023-12-05 11:51>mash sketch error
- Issue comment#42octolis2023-10-12 13:32PanACoTA prepare command download from NCBI error
- Issue#34asetGem2023-09-19 13:28Error at alignment
- Issue comment#34JasmineGamblin2023-09-14 12:59Error at alignment
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 19 stars here means stars gained during the window, not the repo's star count.