Yleaf software for human Y-chromosomal haplogroup inference from next generation sequencing data
active 2023-08-22 → 2026-06-10 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 1024 days from 2023-08-22 to 2026-06-10. Pushes: 30 total, peak 8 in a day. Pull requests: 15 total, peak 2 in a day. Issues: 16 total, peak 3 in a day. Comments: 38 total, peak 4 in a day. Stars: 13 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| dionzand | 36 | 13 | 12 | 6 |
| 6bass6 | 27 | 17 | 1 | 7 |
| trianglegrrl | 9 | 0 | 1 | 7 |
| Stikus | 8 | 0 | 1 | 6 |
| TCLamnidis | 3 | 0 | 0 | 2 |
| serge2016 | 3 | 0 | 0 | 2 |
| 6bass6-010 | 3 | 0 | 0 | 0 |
| alexreg | 2 | 0 | 0 | 0 |
| liangqi | 2 | 0 | 0 | 2 |
| zmaroti | 2 | 0 | 0 | 0 |
| teepean | 2 | 0 | 0 | 1 |
| RandyHarr | 2 | 0 | 0 | 2 |
| Haike2002 | 2 | 0 | 0 | 1 |
| aug-x | 1 | 0 | 0 | 1 |
| jkimsis | 1 | 0 | 0 | 0 |
| ld9866 | 1 | 0 | 0 | 0 |
| massi287 | 1 | 0 | 0 | 0 |
| stuartn60 | 1 | 0 | 0 | 1 |
| cascadingstyletrees | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Releasegithub-actions[bot]2026-05-30 09:06Yleaf v4.1.1
- Issue comment#53aug-x2026-05-27 06:37Error
- Releasegithub-actions[bot]2026-05-15 06:59Yleaf v4.0
- Issue comment#38liangqi2026-04-04 20:31Fix multi-processing bug
- Issue comment#38liangqi2026-04-04 12:41Fix multi-processing bug
- Issue comment#32TCLamnidis2025-05-23 10:01Add command-line options for custom reference genomes
- Issue comment#24TCLamnidis2025-05-23 09:51Add Yleaf to PyPI/bioconda
- Issue#24TCLamnidis2025-05-23 09:51Add Yleaf to PyPI/bioconda
- Issue#35jkimsis2025-05-12 10:26--ancient_DNA argument not explained in the manual
- Issue#34alexreg2025-05-08 01:20Huge bug with multiprocessing
- Issue#33alexreg2025-05-07 01:50Error looking for reference genome
- Issue comment#32trianglegrrl2025-04-23 22:18Add command-line options for custom reference genomes
- Issue comment#32dionzand2025-04-14 08:50Add command-line options for custom reference genomes
- Issue comment#32trianglegrrl2025-04-11 10:06Add command-line options for custom reference genomes
- Issue comment#32trianglegrrl2025-04-04 10:31Add command-line options for custom reference genomes
- Issue comment#32trianglegrrl2025-03-29 20:19Add command-line options for custom reference genomes
- Issue comment#32dionzand2025-03-28 21:44Add command-line options for custom reference genomes
- Issue comment#32trianglegrrl2025-03-28 14:55Add command-line options for custom reference genomes
- Issue comment#24trianglegrrl2025-03-28 14:49Add Yleaf to PyPI/bioconda
- Pull request#32trianglegrrl2025-03-28 14:37
- Issue#31zmaroti2025-02-12 15:16likely invalid code at pileup frequency parsing
- Issue#30zmaroti2025-02-12 13:08samtools mpileup use -B option to keep original BAQ of reads
- Pull request#29dionzand2024-09-23 08:36
- Pull request#29dionzand2024-09-23 08:36
- Issue#28Haike20022024-09-02 10:46Yleaf.py error: [E::mpileup] fail to parse region 'None' with /home/haikev/y_leaf/y_leaf/007_KAPA_R1/007_KAPA_R1.bam
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 13 stars here means stars gained during the window, not the repo's star count.