FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.
active 2023-08-31 → 2026-02-26 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 911 days from 2023-08-31 to 2026-02-26. Pushes: 339 total, peak 37 in a day. Pull requests: 4 total, peak 2 in a day. Issues: 11 total, peak 2 in a day. Comments: 15 total, peak 2 in a day. Stars: 12 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| olivierrue | 297 | 289 | 0 | 6 |
| mariabernard | 35 | 29 | 2 | 4 |
| vindarbot | 20 | 20 | 0 | 0 |
| gregdev00 | 4 | 0 | 0 | 1 |
| rpeguil | 3 | 0 | 0 | 2 |
| LabeoFD | 2 | 0 | 0 | 1 |
| DntBScrdDv | 2 | 0 | 0 | 1 |
| frederic-mahe | 2 | 0 | 2 | 0 |
| CaroleBelliardo | 1 | 0 | 0 | 0 |
| tchaussepiedifb | 1 | 0 | 0 | 0 |
| LafontRapnouilTristan | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#79rpeguil2025-06-12 06:46Issues denoising step command lines
- Issue#79rpeguil2025-06-12 06:46Issues denoising step command lines
- Issue comment#79rpeguil2025-06-09 12:07Issues denoising step command lines
- Issue comment#78mariabernard2025-05-07 10:21Syntax error in FROGS_preprocess v4.2.0+galaxy0 missing `]` in wrapper
- Issue#78tchaussepiedifb2025-05-07 10:00Syntax error in FROGS_preprocess v4.2.0+galaxy0 missing `]` in wrapper
- Issue#77gregdev002025-05-06 16:13Different behaviour in FROGS 4.0.1 vs 5.0.1
- Issue#74olivierrue2025-05-05 12:18how to run frogs5.0.0 using command line?
- Issue#76olivierrue2025-05-05 12:18FROGS Custom database
- Issue comment#77olivierrue2025-05-05 05:34Different behaviour in FROGS 4.0.1 vs 5.0.1
- Releaseolivierrue2025-04-30 11:44v5.0.2
- Issue#75gregdev002025-04-23 12:52Exception in denoising.py when using --denoising and --distance > 1 arguments
- Issue comment#77gregdev002025-04-17 12:30Different behaviour in FROGS 4.0.1 vs 5.0.1
- Issue comment#77mariabernard2025-04-16 12:44Different behaviour in FROGS 4.0.1 vs 5.0.1
- Releasemariabernard2025-04-02 13:34v4.2.0
- Releasemariabernard2025-04-02 12:42v4.2.0
- Issue comment#76olivierrue2025-03-13 06:27FROGS Custom database
- Releaseolivierrue2025-03-03 17:55v5.0.1
- Releaseolivierrue2025-03-03 13:05v5.0.1
- Releaseolivierrue2025-03-03 11:10v5.0.1
- Releaseolivierrue2025-03-03 11:08v5.0.1
- Releaseolivierrue2025-03-03 10:50v5.0.1
- Issue#75gregdev002025-02-28 13:10Exception in denoising.py when using --denoising and --distance > 1 arguments
- Issue comment#74olivierrue2025-02-11 16:00how to run frogs5.0.0 using command line?
- Issue#74LabeoFD2025-02-11 15:11how to run frogs5.0.0 using command line?
- Issue comment#72olivierrue2025-01-17 12:59Difficulty Installing and Running FROGS Workflow v5
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 12 stars here means stars gained during the window, not the repo's star count.