Fork (from EMBL Gitlab) of the looptrace project: https://git.embl.de/grp-ellenberg/looptrace
active 2023-09-18 → 2025-05-10 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 601 days from 2023-09-18 to 2025-05-10. Pushes: 765 total, peak 22 in a day. Pull requests: 131 total, peak 12 in a day. Issues: 460 total, peak 16 in a day. Comments: 200 total, peak 14 in a day. Stars: 2 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| vreuter | 1.5K | 765 | 131 | 185 |
| TLSteinacker | 12 | 0 | 0 | 12 |
| ines-prlesi | 2 | 0 | 0 | 2 |
| josephneos1010 | 1 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue#444vreuter2025-04-23 11:46Locus spot QC filter on sufficient diffuseness of Gaussian fit
- Issue#443vreuter2025-04-23 11:44Prohibit pixel values from being negative
- Releasevreuter2025-04-04 23:35Release v0.14.1
- Pull request#442vreuter2025-04-04 23:33
- Pull request#442vreuter2025-04-04 23:33
- Releasevreuter2025-04-03 09:23Release v0.14.0
- Releasevreuter2025-04-02 14:25Release v0.14.0
- Issue#437vreuter2025-04-02 14:20The filtered bead counts heatmap (by (FOV, time) pair) is broken
- Issue#436vreuter2025-04-02 14:20`beadIndex` column occurs twice in the each bead ROIs CSV
- Pull request#441vreuter2025-04-02 14:20
- Pull request#441vreuter2025-04-02 13:27
- Issue#440vreuter2025-03-19 11:43Allow `False` for value of key for filtration of FISH spots by bead proximity, or allow it to be missing
- Releasevreuter2025-03-06 14:14Release v0.13.2
- Issue#438vreuter2025-03-06 14:11Cross-channel signal analysis crashes for out-of-bounds coordinates
- Pull request#439vreuter2025-03-06 14:11
- Issue#105vreuter2025-03-04 10:04New drift correction code results in nonzero fine drift for reference points
- Issue#133vreuter2025-03-03 13:02Mismatch on shape among trace spot images from same ROI causes all zeros
- Issue#136vreuter2025-03-03 13:02Padding is all-zeros everywhere in *_dc_rois.csv file
- Issue#55vreuter2025-03-03 13:02Assignment of spots to nuclei can break if no ROIs remain
- Issue#74vreuter2025-03-03 13:02.npz file generated from the detected spots zipping only shows one image in napari
- Issue#437vreuter2025-02-28 14:13The filtered bead counts heatmap (by (FOV, time) pair) is broken
- Issue comment#435vreuter2025-02-27 17:07Merges are not iterative
- Issue comment#434TLSteinacker2025-02-26 11:31Rethinking the "fine" (subpixel resolution) drift correction
- Issue#434vreuter2025-02-26 10:46Rethinking the "fine" (subpixel resolution) drift correction
- Issue#433vreuter2025-02-26 10:41We could generate fiducial bead ROIs only for the reference timepoint
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 2 stars here means stars gained during the window, not the repo's star count.