creating reference databases for amplicon sequencing
active 2023-08-17 → 2026-02-12 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 911 days from 2023-08-17 to 2026-02-12. Pushes: 42 total, peak 4 in a day. Pull requests: 6 total, peak 2 in a day. Issues: 142 total, peak 23 in a day. Comments: 303 total, peak 16 in a day. Stars: 29 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| gjeunen | 249 | 37 | 0 | 150 |
| rturba | 42 | 0 | 0 | 38 |
| hughcross | 21 | 5 | 0 | 16 |
| slambrechts | 20 | 0 | 0 | 7 |
| ThomasLuypaert | 13 | 0 | 0 | 10 |
| saraswaminathan | 10 | 0 | 0 | 6 |
| famosab | 9 | 0 | 0 | 7 |
| gregdenay | 8 | 0 | 1 | 5 |
| marchoeppner | 8 | 0 | 0 | 5 |
| Guillermouceda | 7 | 0 | 0 | 6 |
| jodjo86 | 7 | 0 | 0 | 4 |
| timz0605 | 7 | 0 | 0 | 5 |
| a4000 | 6 | 0 | 2 | 4 |
| mmizuyama | 6 | 0 | 0 | 5 |
| mikeallen-eco | 4 | 0 | 0 | 2 |
| andremicc | 4 | 0 | 0 | 3 |
| simiaoyan | 4 | 0 | 0 | 3 |
| domivika | 4 | 0 | 0 | 1 |
| v-tettama | 3 | 0 | 0 | 1 |
| philippbayer | 3 | 0 | 0 | 2 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#116gregdenay2026-01-29 06:30Rework in_silico_pcr to be memory efficient on large inputs
- Pull request#116gregdenay2026-01-15 10:48
- Issue comment#115gregdenay2026-01-15 06:51Memory usage in_silico_pcr
- Issue comment#113andremicc2025-12-22 15:23Unable to compute phylogenetic tree
- Issue comment#112gjeunen2025-12-22 05:47Export db in blast-tax or notax format
- Issue comment#112andremicc2025-12-21 13:01Export db in blast-tax or notax format
- Issue comment#112gjeunen2025-12-20 01:32Export db in blast-tax or notax format
- Issue#112andremicc2025-12-19 09:53Export db in blast-tax or notax format
- Issue comment#111gjeunen2025-11-25 05:01FYI - BarBeQue
- Issue comment#109gjeunen2025-11-04 06:29silent error when downloading from BOLD
- Issue#110sroblet2025-11-01 05:36KeyError: 'tax number' Module 5.7.5 --completeness-table
- Releasegjeunen2025-10-01 07:09crabs v1.12.0
- Issue comment#108gjeunen2025-10-01 04:02Update the mitofish download function
- Releasegjeunen2025-10-01 04:00crabs v1.11.0
- Issue comment#91hughcross2025-08-21 03:05in silico PCR crashes due to cutadapt buffer size (with fix)
- Issue comment#91gjeunen2025-08-13 07:46in silico PCR crashes due to cutadapt buffer size (with fix)
- Issue comment#106eduardavalerio2025-07-22 21:04OverflowError: FASTA/FASTQ record does not fit into buffer
- Issue#106eduardavalerio2025-07-22 21:04OverflowError: FASTA/FASTQ record does not fit into buffer
- Issue comment#99gjeunen2025-07-22 12:36--exclude is used more than once
- Issue comment#106gjeunen2025-07-21 11:16OverflowError: FASTA/FASTQ record does not fit into buffer
- Issue comment#106eduardavalerio2025-07-21 11:09OverflowError: FASTA/FASTQ record does not fit into buffer
- Issue#106eduardavalerio2025-07-19 17:22OverflowError: FASTA/FASTQ record does not fit into buffer
- Issue comment#105gjeunen2025-07-17 09:58--all-start-positions produces fewer amplicons
- Issue#105mikeallen-eco2025-07-15 20:38--all-start-positions produces fewer amplicons
- Issue#104gjeunen2025-07-10 08:23no more option for importing in-house custom database?
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 29 stars here means stars gained during the window, not the repo's star count.