DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal and tumor-only sequencing data.
active 2024-11-16 → 2026-06-26 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 588 days from 2024-11-16 to 2026-06-26. Pushes: 8 total, peak 3 in a day. Pull requests: 1 total, peak 1 in a day. Issues: 34 total, peak 2 in a day. Comments: 85 total, peak 6 in a day. Stars: 66 total, peak 8 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| kishwarshafin | 38 | 7 | 0 | 24 |
| pichuan | 19 | 0 | 0 | 14 |
| danielecook | 7 | 1 | 0 | 5 |
| ljh-9809 | 5 | 0 | 0 | 2 |
| byoo | 4 | 0 | 0 | 3 |
| lakshsesh97 | 4 | 0 | 0 | 2 |
| ddzhang3 | 3 | 0 | 0 | 3 |
| yashcrux | 3 | 0 | 0 | 3 |
| QichenFU | 3 | 0 | 0 | 1 |
| mkazanov | 3 | 0 | 0 | 3 |
| minw2828 | 3 | 0 | 0 | 2 |
| AndrewCarroll | 2 | 0 | 0 | 2 |
| DayTimeMouse | 2 | 0 | 0 | 1 |
| junyao829 | 2 | 0 | 0 | 1 |
| Larrycpan | 2 | 0 | 0 | 1 |
| mdelcorvo | 2 | 0 | 0 | 1 |
| sayangsep | 2 | 0 | 0 | 1 |
| eesiribloom | 2 | 0 | 0 | 2 |
| YiqunCao | 2 | 0 | 0 | 1 |
| yumh0811 | 2 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue#95pichuan2026-06-26 23:54html report - feature request
- Issue#97pichuan2026-06-26 23:41WES_TUMOR_ONLY model for low VAF variants
- Issue comment#97pichuan2026-06-26 23:41WES_TUMOR_ONLY model for low VAF variants
- Issue comment#90kishwarshafin2026-04-23 21:24Difficulty with ONT data
- Issue comment#90robert-a-forsyth2026-04-15 05:53Difficulty with ONT data
- Issue comment#90kishwarshafin2026-04-07 16:19Difficulty with ONT data
- Issue comment#86risha-vijayvargiya-222026-03-25 07:37chore: Migrate gsutil usage to gcloud storage
- Releasekishwarshafin2026-03-05 23:37DeepSomatic 1.10.0
- Issue comment#82kishwarshafin2026-03-05 00:24DeepSomatic does not finish for some samples in Slurm runs
- Pull request#83gurusai-voleti2026-02-16 13:34
- Issue comment#82pichuan2026-02-03 17:40DeepSomatic does not finish for some samples in Slurm runs
- Issue comment#81yumh08112026-01-30 09:46PASS call but GT is 0/0?
- Issue#80kishwarshafin2026-01-29 02:38VAF distribution of variants with PASS status
- Issue comment#80kishwarshafin2026-01-20 19:13VAF distribution of variants with PASS status
- Issue comment#80kishwarshafin2026-01-15 18:05VAF distribution of variants with PASS status
- Issue comment#80mkazanov2026-01-15 14:43VAF distribution of variants with PASS status
- Issue#81yumh08112026-01-13 06:17PASS call but GT is 0/0?
- Issue comment#80kishwarshafin2026-01-12 22:44VAF distribution of variants with PASS status
- Issue comment#79lipikakalson2026-01-07 09:38DeepSomatic fails on HPC with small /tmp
- Issue comment#80mkazanov2026-01-06 20:40VAF distribution of variants with PASS status
- Issue comment#80mkazanov2026-01-06 20:27VAF distribution of variants with PASS status
- Issue comment#79kishwarshafin2026-01-06 19:38DeepSomatic fails on HPC with small /tmp
- Issue comment#80kishwarshafin2026-01-06 19:36VAF distribution of variants with PASS status
- Issue#78kishwarshafin2025-12-15 18:47Missing somatic SNP in Pacbio RNA-seq data
- Issue comment#78YiqunCao2025-11-25 03:04Missing somatic SNP in Pacbio RNA-seq data
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 66 stars here means stars gained during the window, not the repo's star count.