Transcript assembly and quantification for RNA-Seq
active 2023-09-05 → 2026-08-09 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 1070 days from 2023-09-05 to 2026-08-09. Pushes: 105 total, peak 6 in a day. Pull requests: 6 total, peak 3 in a day. Issues: 45 total, peak 3 in a day. Comments: 69 total, peak 3 in a day. Stars: 99 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| gpertea | 88 | 65 | 1 | 17 |
| mpertea | 43 | 39 | 0 | 4 |
| ishinder | 5 | 1 | 3 | 1 |
| unikill066 | 4 | 0 | 0 | 3 |
| elfring | 3 | 0 | 0 | 0 |
| DustinSokolowski | 3 | 0 | 0 | 3 |
| ytomofuji | 3 | 0 | 0 | 1 |
| santataRU | 3 | 0 | 0 | 2 |
| isaacvock | 3 | 0 | 0 | 3 |
| Motoufiq | 3 | 0 | 0 | 1 |
| eggrandio | 2 | 0 | 0 | 1 |
| PVlasov93 | 2 | 0 | 0 | 1 |
| CuteGold0407 | 2 | 0 | 0 | 1 |
| zjuezhen | 2 | 0 | 0 | 1 |
| Tang-pro | 2 | 0 | 0 | 1 |
| Cesnl | 2 | 0 | 0 | 1 |
| Dreista | 2 | 0 | 1 | 1 |
| SophieEhres | 1 | 0 | 0 | 0 |
| rahil19 | 1 | 0 | 0 | 1 |
| dazhuang420 | 1 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#502gpertea2026-02-21 15:34GVec error: invalid index: 10
- Issue#497Bathroomboss2026-01-12 08:54Implementation details of --merge mode in StringTie
- Issue comment#465smahaffey2025-11-12 19:27Segmentation fault with --mix option
- Issue comment#465gpertea2025-11-10 20:47Segmentation fault with --mix option
- Issue comment#465mpertea2025-11-10 20:36Segmentation fault with --mix option
- Issue comment#465mpertea2025-11-10 20:09Segmentation fault with --mix option
- Issue comment#493gpertea2025-11-09 21:09Duplicated transcript IDs when using -G and --merge in StringTie v3.0.2
- Issue#493gpertea2025-11-09 21:08Duplicated transcript IDs when using -G and --merge in StringTie v3.0.2
- Issue comment#491nurie052025-11-03 18:09Bug report: All transcripts for some locus are lost after merging GTF files with stringtie --merge, despite their presence in the individual GTF files
- Issue comment#476DustinSokolowski2025-10-17 17:22StringTie v3.0.0 reintroduces Segfault and Runtime error that was fixed in StringTie V2
- Issue comment#476DustinSokolowski2025-10-17 14:32StringTie v3.0.0 reintroduces Segfault and Runtime error that was fixed in StringTie V2
- Releasegpertea2025-10-16 17:15v3.0.2 release
- Issue comment#339m-jahn2025-10-07 13:52How to integrate point-feature option in the standard workflow ?
- Issue comment#476DustinSokolowski2025-10-06 14:35StringTie v3.0.0 reintroduces Segfault and Runtime error that was fixed in StringTie V2
- Issue comment#476gpertea2025-10-05 20:55StringTie v3.0.0 reintroduces Segfault and Runtime error that was fixed in StringTie V2
- Issue#491santataRU2025-10-03 14:46Bug report: All transcripts for some locus are lost after merging GTF files with stringtie --merge, despite their presence in the individual GTF files
- Pull request#490ishinder2025-09-26 21:21
- Pull request#489ishinder2025-09-26 21:19
- Pull request#489ishinder2025-09-26 21:19
- Issue comment#451phillipkwest2025-09-18 05:02Error: could not locate transcript ENST00000472017.1
- Issue comment#481anne-yoo2025-08-25 09:23-s (singlethr) is 4.75 or 1.5 when using -L ?
- Pull request#482vil022025-08-19 22:15
- Issue#475gpertea2025-08-11 13:04Reproducibility of tests (stringtie 3.0.0)
- Issue comment#475gpertea2025-08-11 12:02Reproducibility of tests (stringtie 3.0.0)
- Releasegpertea2025-08-11 10:55v3.0.1 release
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 99 stars here means stars gained during the window, not the repo's star count.