A set of tools to annotate VCF files with expression and readcount data
active 2023-09-01 → 2026-08-05 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 1070 days from 2023-09-01 to 2026-08-05. Pushes: 9 total, peak 2 in a day. Pull requests: 1 total, peak 1 in a day. Issues: 7 total, peak 2 in a day. Comments: 18 total, peak 4 in a day. Stars: 6 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| susannasiebert | 13 | 3 | 1 | 6 |
| chrisamiller | 12 | 6 | 0 | 1 |
| sariya | 6 | 0 | 0 | 2 |
| bobojin46 | 4 | 0 | 0 | 3 |
| xmy1990 | 2 | 0 | 0 | 1 |
| lukaas33 | 2 | 0 | 0 | 2 |
| weilinwu97 | 2 | 0 | 0 | 1 |
| malachig | 1 | 0 | 0 | 1 |
| famosab | 1 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Releasesusannasiebert2026-06-30 18:445.1.0
- Pull request#84susannasiebert2026-01-30 16:23
- Issue comment#76famosab2026-01-30 14:08Cannot install `vatools` with pip
- Issue comment#82susannasiebert2025-08-12 12:56Error in vcf-expression-annotator for add expression data to mulit sample VCF
- Issue comment#82susannasiebert2025-08-11 16:32Error in vcf-expression-annotator for add expression data to mulit sample VCF
- Issue comment#77lukaas332024-08-28 20:54Error in gtf library when trying to add stringtie output
- Issue comment#77susannasiebert2024-08-28 20:44Error in gtf library when trying to add stringtie output
- Issue comment#77lukaas332024-08-28 19:36Error in gtf library when trying to add stringtie output
- Issue comment#74xmy19902024-02-07 01:49ref-transcript-mismatch-reporter does not work
- Issue#74xmy19902024-02-02 05:30ref-transcript-mismatch-reporter does not work
- Issue comment#73bobojin462023-11-10 02:09ValueError: invalid literal for int() with base 10: '"0' when using vcf-expression-annotator
- Issue comment#73bobojin462023-11-10 02:05ValueError: invalid literal for int() with base 10: '"0' when using vcf-expression-annotator
- Issue comment#73bobojin462023-11-09 01:22ValueError: invalid literal for int() with base 10: '"0' when using vcf-expression-annotator
- Issue#73bobojin462023-11-08 11:53ValueError: invalid literal for int() with base 10: '"0' when using vcf-expression-annotator
- Issue comment#65sariya2023-10-10 18:48which version is on pip?
- Issue#65sariya2023-10-10 18:48which version is on pip?
- Issue#62sariya2023-10-10 18:47conda
- Issue comment#62sariya2023-10-10 18:47conda
- Issue comment#62susannasiebert2023-10-10 08:49conda
- Issue comment#65susannasiebert2023-10-10 08:46which version is on pip?
- Issue#65sariya2023-10-06 21:51which version is on pip?
- Issue comment#52malachig2023-09-26 21:13VAtools vcf-expression-annotator does not add gene expression for genes without annotated gene names
- Issue comment#63weilinwu972023-09-21 01:00ref-transcript-mismatch-reporter ZeroDivisionError: float division by zero
- Issue#63weilinwu972023-09-19 04:17ref-transcript-mismatch-reporter ZeroDivisionError: float division by zero
- Issue#62sariya2023-09-01 12:11conda
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 6 stars here means stars gained during the window, not the repo's star count.