Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.
active 2023-10-11 → 2026-05-05 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 938 days from 2023-10-11 to 2026-05-05. Pushes: 4 total, peak 4 in a day. Pull requests: 0 total, peak 0 in a day. Issues: 9 total, peak 2 in a day. Comments: 10 total, peak 2 in a day. Stars: 21 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
Recent activity
Latest issues, pull requests and releases
- Issue#199zhangpicb2025-02-06 02:13RNA stranded sequencing with wrong XS tags
- Issue comment#196santataRU2024-10-25 03:10fix: junctions extractor count overlapping read pairs once
- Issue comment#196TimD12024-10-25 00:57fix: junctions extractor count overlapping read pairs once
- Issue comment#196santataRU2024-10-20 15:51fix: junctions extractor count overlapping read pairs once
- Issue comment#176santataRU2024-10-10 00:00installation problem
- Issue comment#178R-Najjar2024-09-14 17:44Questions about compare_junctions_hist_v2.R
- Issue comment#174NaotoKubota2024-07-24 01:17The -b option of "junctions extract" doesn't work
- Issue#174NaotoKubota2024-07-24 01:17The -b option of "junctions extract" doesn't work
- Issue#189yfarjoun2024-07-03 19:57feat: Allow read filtering based on mapping quality to `junctions extract`
- Issue comment#183yfarjoun2024-07-03 19:52Feature request
- Issue comment#185yfarjoun2024-07-03 19:48Unrecognized strandness argument!
- Issue#187yfarjoun2024-06-26 20:06bug report: junction extract tool should not count overlapping reads as double support for a junction
- Issue#186yfarjoun2024-06-26 20:01Feature request: add per-read anchor requirement to `junction extract` tool
- Issue#185hsymoon2024-05-11 08:34Unrecognized strandness argument!
- Issue comment#180hsymoon2024-05-11 06:53Building error
- Issue#184CuteGold04072024-04-10 05:01KeyError: 'score' problem
- Issue#181bkffadia2023-12-07 06:15Splice junctions are delayed by one position at the 5' side
- Issue comment#139nsteinau2023-11-27 05:26junctions extract producing blank file (no output)
- Issue#179Eteleeb2023-10-24 20:40Test data for regtools cannot be found!
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 21 stars here means stars gained during the window, not the repo's star count.