A collection of scripts for processing fastq files in ways to improve de novo transcriptome assemblies, and for evaluating those assemblies.
active 2023-08-25 → 2025-08-07 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 714 days from 2023-08-25 to 2025-08-07. Pushes: 16 total, peak 6 in a day. Pull requests: 0 total, peak 0 in a day. Issues: 10 total, peak 3 in a day. Comments: 13 total, peak 6 in a day. Stars: 11 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| adamfreedman | 29 | 16 | 0 | 7 |
| 000generic | 6 | 0 | 0 | 3 |
| Lilneo786 | 2 | 0 | 0 | 2 |
| brant-ac | 1 | 0 | 0 | 1 |
| SergeyBaikal | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#11000generic2024-03-13 23:50UnboundLocalError possibly due to absence of overrepresented sequences in Fastqc
- Issue comment#6adamfreedman2024-03-08 14:50Unbound Local Error seqs variable
- Issue#6adamfreedman2024-03-08 14:50Unbound Local Error seqs variable
- Issue#11adamfreedman2024-03-08 14:49UnboundLocalError possibly due to absence of overrepresented sequences in Fastqc
- Issue#12adamfreedman2024-01-22 15:13FilterUncorrectabledPEfastq.py Run and results
- Issue comment#12adamfreedman2024-01-19 16:50FilterUncorrectabledPEfastq.py Run and results
- Issue#12SergeyBaikal2024-01-19 16:22FilterUncorrectabledPEfastq.py Run and results
- Issue comment#11000generic2023-12-23 22:01UnboundLocalError possibly due to absence of overrepresented sequences in Fastqc
- Issue comment#10Lilneo7862023-12-23 14:45Error running decode in FilterUncorrectabledPEfastq.py
- Issue comment#11adamfreedman2023-12-23 14:24UnboundLocalError possibly due to absence of overrepresented sequences in Fastqc
- Issue comment#10adamfreedman2023-12-23 14:23Error running decode in FilterUncorrectabledPEfastq.py
- Issue#11000generic2023-12-23 08:22UnboundLocalError possibly due to absence of overrepresented sequences in Fastqc
- Issue#10000generic2023-12-23 08:06Error running decode in FilterUncorrectabledPEfastq.py
- Issue comment#10000generic2023-12-23 00:41Error running decode in FilterUncorrectabledPEfastq.py
- Issue comment#10Lilneo7862023-12-23 00:36Error running decode in FilterUncorrectabledPEfastq.py
- Issue#10000generic2023-12-23 00:30Error running decode in FilterUncorrectabledPEfastq.py
- Issue comment#3brant-ac2023-10-23 17:28StopIteration
- Issue comment#3adamfreedman2023-10-12 14:18StopIteration
- Issue#3adamfreedman2023-10-12 14:18StopIteration
- Issue#7adamfreedman2023-10-12 14:16Error running FilterUncorrectabledPEfastq.py
- Issue comment#7adamfreedman2023-10-12 14:16Error running FilterUncorrectabledPEfastq.py
- Issue#9adamfreedman2023-10-12 14:16updated FilterUncorrectabledPEfastq.py has "cor" in headings
- Issue comment#9adamfreedman2023-10-12 14:16updated FilterUncorrectabledPEfastq.py has "cor" in headings
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 11 stars here means stars gained during the window, not the repo's star count.