HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
active 2024-06-03 → 2026-02-04 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 612 days from 2024-06-03 to 2026-02-04. Pushes: 17 total, peak 5 in a day. Pull requests: 6 total, peak 1 in a day. Issues: 17 total, peak 3 in a day. Comments: 56 total, peak 7 in a day. Stars: 11 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| iosonofabio | 62 | 17 | 3 | 35 |
| davmlaw | 7 | 0 | 2 | 4 |
| rohanmaddamsetti | 5 | 0 | 1 | 4 |
| kusimpkins | 5 | 0 | 0 | 5 |
| lpryszcz | 3 | 0 | 0 | 1 |
| santataRU | 3 | 0 | 0 | 1 |
| gl-eb | 2 | 0 | 0 | 2 |
| TNalpat | 2 | 0 | 0 | 1 |
| ana-mil | 1 | 0 | 0 | 0 |
| idlip | 1 | 0 | 0 | 1 |
| racng | 1 | 0 | 0 | 0 |
| multiomics23 | 1 | 0 | 0 | 0 |
| ronghai-li | 1 | 0 | 0 | 1 |
| seechange0710 | 1 | 0 | 0 | 1 |
| denvercal1234GitHub | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue#108iosonofabio2026-02-04 05:37Project releases
- Issue comment#108iosonofabio2026-02-02 22:45Project releases
- Issue comment#83iosonofabio2026-01-28 00:21'tag' attributes lost in GTF parsing
- Issue comment#104davmlaw2026-01-28 00:19[BUG] SyntaxWarning in regex in HTSeq.features.py
- Issue comment#98davmlaw2025-09-02 20:19fix for issue #97 - GFF_Reader crashes if gff_version is not None
- Issue comment#107iosonofabio2025-08-27 10:10counting collapsed reads from ShortStack
- Issue comment#107lpryszcz2025-08-27 10:04counting collapsed reads from ShortStack
- Issue#107lpryszcz2025-08-27 10:04counting collapsed reads from ShortStack
- Issue comment#107iosonofabio2025-08-01 22:00counting collapsed reads from ShortStack
- Issue#107lpryszcz2025-08-01 13:36counting collapsed reads from ShortStack
- Issue comment#105iosonofabio2025-06-03 06:53Update features.py to fix SyntaxWarning in regexes in HTSeq.features.py
- Pull request#105iosonofabio2025-06-03 06:52
- Issue#106multiomics232025-06-02 19:38[BUG] Multimappers/ not unique
- Issue comment#105iosonofabio2025-06-02 10:32Update features.py to fix SyntaxWarning in regexes in HTSeq.features.py
- Issue comment#105rohanmaddamsetti2025-06-02 10:03Update features.py to fix SyntaxWarning in regexes in HTSeq.features.py
- Issue comment#105rohanmaddamsetti2025-06-02 09:03Update features.py to fix SyntaxWarning in regexes in HTSeq.features.py
- Issue comment#105rohanmaddamsetti2025-06-02 09:03Update features.py to fix SyntaxWarning in regexes in HTSeq.features.py
- Issue comment#105rohanmaddamsetti2025-06-02 08:49Update features.py to fix SyntaxWarning in regexes in HTSeq.features.py
- Issue comment#105iosonofabio2025-06-02 08:43Update features.py to fix SyntaxWarning in regexes in HTSeq.features.py
- Pull request#105rohanmaddamsetti2025-06-02 08:38
- Issue comment#104iosonofabio2025-06-02 04:43[BUG] SyntaxWarning in regex in HTSeq.features.py
- Issue comment#103iosonofabio2025-05-16 04:44HTSeq Installation on Mac with M-Series Chip
- Issue comment#103santataRU2025-05-16 04:41HTSeq Installation on Mac with M-Series Chip
- Issue#103santataRU2025-05-16 04:41HTSeq Installation on Mac with M-Series Chip
- Issue comment#103iosonofabio2025-05-16 04:34HTSeq Installation on Mac with M-Series Chip
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 11 stars here means stars gained during the window, not the repo's star count.