Collection of dockerfiles with bioinformatic tools used to execute snakemake with singularity.
active 2023-08-15 → 2026-08-20 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 1102 days from 2023-08-15 to 2026-08-20. Pushes: 360 total, peak 18 in a day. Pull requests: 297 total, peak 15 in a day. Issues: 0 total, peak 0 in a day. Comments: 22 total, peak 2 in a day. Stars: 2 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| padraicc | 185 | 84 | 90 | 1 |
| jonca79 | 164 | 59 | 69 | 6 |
| MagdalenaZZ | 149 | 91 | 52 | 4 |
| Smeds | 91 | 53 | 32 | 1 |
| camcl | 48 | 27 | 17 | 1 |
| elleira | 42 | 13 | 21 | 0 |
| andrewgull | 23 | 10 | 12 | 0 |
| coderabbitai[bot] | 16 | 0 | 0 | 9 |
| nnneeennn | 14 | 12 | 1 | 0 |
| ikarls | 7 | 5 | 2 | 0 |
| zezzipa | 4 | 2 | 1 | 0 |
| juliahoglund | 4 | 4 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#349coderabbitai[bot]2026-04-02 15:37feat: Fragmentomics metrics
- Issue comment#348coderabbitai[bot]2026-04-02 13:48feat: fragmentomics_metrics docker producing a number of measures
- Pull request#339jonca792026-03-10 16:52
- Pull request#338jonca792026-03-10 16:35
- Pull request#331padraicc2026-03-09 13:30
- Pull request#331padraicc2026-03-09 13:27
- Pull request#326padraicc2026-03-04 13:24
- Issue comment#325coderabbitai[bot]2026-03-04 11:02feat: add quarto and plotly
- Pull request#324andrewgull2026-02-27 09:26
- Pull request#323jonca792026-02-12 10:54
- Pull request#320camcl2026-02-06 12:01
- Issue comment#318coderabbitai[bot]2026-02-03 08:25fix(fastp): fix python version to 3.11
- Pull request#317padraicc2026-02-02 10:49
- Pull request#316padraicc2026-01-30 15:48
- Pull request#313padraicc2026-01-29 14:55
- Issue comment#312coderabbitai[bot]2026-01-28 12:16feat: update fastp to v0.24.3
- Pull request#306jonca792025-10-27 07:34
- Pull request#305andrewgull2025-10-23 13:34
- Pull request#303camcl2025-09-19 11:29
- Pull request#303camcl2025-09-19 09:50
- Pull request#302padraicc2025-09-12 09:45
- Pull request#301camcl2025-09-02 06:15
- Pull request#300padraicc2025-08-25 06:25
- Pull request#300padraicc2025-08-25 06:25
- Pull request#298camcl2025-08-06 08:09
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 2 stars here means stars gained during the window, not the repo's star count.