A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data
active 2023-09-03 → 2026-02-20 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 902 days from 2023-09-03 to 2026-02-20. Pushes: 12 total, peak 2 in a day. Pull requests: 8 total, peak 2 in a day. Issues: 10 total, peak 2 in a day. Comments: 16 total, peak 3 in a day. Stars: 13 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| vmixao | 31 | 12 | 8 | 6 |
| mpolemis | 6 | 0 | 0 | 6 |
| marchoeppner | 4 | 0 | 0 | 2 |
| eam12 | 2 | 0 | 0 | 1 |
| arshdeep1k | 2 | 0 | 0 | 1 |
| jhc9-cdc | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Pull request#49vmixao2026-02-20 10:25
- Pull request#48vmixao2026-02-20 10:09
- Pull request#46vmixao2026-02-18 18:20
- Releasevmixao2025-10-22 09:02v2.6.0
- Issue#43vmixao2025-10-22 07:44nomenclature code option
- Issue comment#43vmixao2025-10-02 09:48nomenclature code option
- Issue comment#43arshdeep1k2025-09-24 07:11nomenclature code option
- Issue#43arshdeep1k2025-09-18 01:40nomenclature code option
- Issue comment#41mpolemis2025-07-01 08:28Conda install failure
- Issue comment#41mpolemis2025-06-27 11:53Conda install failure
- Issue comment#41mpolemis2025-06-27 10:33Conda install failure
- Issue comment#41vmixao2025-06-27 08:50Conda install failure
- Issue comment#41mpolemis2025-06-26 11:47Conda install failure
- Issue comment#41mpolemis2025-06-26 10:45Conda install failure
- Issue comment#41mpolemis2025-06-26 10:42Conda install failure
- Pull request#40vmixao2025-06-05 11:02
- Issue#39vmixao2025-06-05 09:21Question about hamming distance vs branch lengths
- Issue comment#39marchoeppner2025-06-05 06:17Question about hamming distance vs branch lengths
- Issue#39marchoeppner2025-06-05 06:12Question about hamming distance vs branch lengths
- Issue comment#38vmixao2025-06-04 13:22Alphabet import used in alignment_processing.py has been removed from Biopython
- Issue#38vmixao2025-06-04 13:22Alphabet import used in alignment_processing.py has been removed from Biopython
- Issue comment#35marchoeppner2024-12-03 06:03Singleton nomemclature not stable across analyses
- Issue#35marchoeppner2024-12-03 06:00Singleton nomemclature not stable across analyses
- Pull request#30vmixao2024-09-27 17:16
- Pull request#30vmixao2024-09-27 17:16
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 13 stars here means stars gained during the window, not the repo's star count.