Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also performs differential gene expression analysis and provides a Command Line Interface (CLI) for advanced users to perform analysis using python and R.
active 2024-10-03 → 2026-06-23 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 629 days from 2024-10-03 to 2026-06-23. Pushes: 30 total, peak 4 in a day. Pull requests: 3 total, peak 2 in a day. Issues: 6 total, peak 3 in a day. Comments: 4 total, peak 3 in a day. Stars: 14 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| z5ouyang | 16 | 10 | 0 | 3 |
| dujiang2025 | 10 | 7 | 3 | 0 |
| wli7 | 6 | 6 | 0 | 0 |
| interactivereport | 4 | 4 | 0 | 0 |
| baohongz | 3 | 3 | 0 | 0 |
| brainfo | 1 | 0 | 0 | 0 |
| pjlmac | 1 | 0 | 0 | 0 |
| hartandrew | 1 | 0 | 0 | 0 |
| coopertdx | 1 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Pull request#116dujiang20252026-01-27 01:05
- Pull request#116dujiang20252026-01-27 01:05
- Pull request#115dujiang20252026-01-13 23:41
- Issue#114brainfo2025-11-01 16:40Feature: export grouped expression summary/matrix as txt
- Issue#113pjlmac2025-09-11 14:01Nerfing/eliminating the DEG analysis functionality?
- Issue#103z5ouyang2024-12-29 00:35File not loading properly for very small number of cells
- Issue#106z5ouyang2024-12-29 00:35functions for DEG analysis
- Issue comment#108z5ouyang2024-12-29 00:33Install cellxgene_VIP on Windows
- Issue#108z5ouyang2024-12-29 00:33Install cellxgene_VIP on Windows
- Issue comment#110z5ouyang2024-12-29 00:30VIPlight function still contains the CLI
- Issue comment#112z5ouyang2024-12-29 00:25VIP with Method not allowed 405
- Issue comment#59coopertdx2024-10-04 07:01VIP Visualization in Plugin
- Issue#110hartandrew2024-10-03 17:33VIPlight function still contains the CLI
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 14 stars here means stars gained during the window, not the repo's star count.