The AMRgen package provides tools for interpreting antimicrobial resistance (AMR) genes, integrating genomic data with phenotypic antimicrobial susceptibility testing (AST) data, and calculating genotype-phenotype associations.
active 2024-12-11 → 2025-06-06 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 178 days from 2024-12-11 to 2025-06-06. Pushes: 73 total, peak 17 in a day. Pull requests: 1 total, peak 1 in a day. Issues: 5 total, peak 2 in a day. Comments: 11 total, peak 5 in a day. Stars: 5 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| katholt | 45 | 34 | 0 | 8 |
| github-actions[bot] | 25 | 25 | 0 | 0 |
| jhawkey | 9 | 5 | 0 | 2 |
| msberends | 9 | 8 | 0 | 1 |
| thomcuddihy | 1 | 0 | 1 | 0 |
| natacha-couto | 1 | 1 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#25msberends2025-03-23 18:16fix interpretation step in import_ncbi_ast
- Issue comment#25katholt2025-03-23 15:33fix interpretation step in import_ncbi_ast
- Issue#29katholt2025-03-23 15:31get_binary_matrix - to do list
- Issue#11katholt2025-03-23 15:31functions to get binary matrix for geno + pheno data
- Issue comment#13katholt2025-03-23 15:26PPV analysis
- Issue comment#16katholt2025-03-23 11:33amr_upset (without complexUpset dependency)
- Issue comment#28katholt2025-03-23 11:31Just trying to run the examples and some minor problems
- Issue#26jhawkey2025-02-19 04:55fix importantion of %>% symbol
- Issue#26jhawkey2025-02-19 03:56fix importantion of %>% symbol
- Issue comment#13jhawkey2025-02-19 03:55PPV analysis
- Pull request#19thomcuddihy2025-02-04 04:14
- Issue#17katholt2025-02-02 09:46add example for barplot to readme
- Issue comment#11katholt2025-02-02 09:45functions to get binary matrix for geno + pheno data
- Issue comment#14jhawkey2025-01-31 01:37upset plot
- Issue comment#11katholt2025-01-25 18:35functions to get binary matrix for geno + pheno data
- Issue comment#1katholt2025-01-25 18:32NCBI AST parser
- Issue comment#1katholt2025-01-25 18:16NCBI AST parser
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 5 stars here means stars gained during the window, not the repo's star count.