A method for circular DNA detection based on probabilistic mapping of ultrashort reads
active 2023-09-20 → 2026-05-08 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 962 days from 2023-09-20 to 2026-05-08. Pushes: 0 total, peak 0 in a day. Pull requests: 1 total, peak 1 in a day. Issues: 15 total, peak 2 in a day. Comments: 29 total, peak 4 in a day. Stars: 16 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| iprada | 17 | 0 | 0 | 17 |
| newpest | 4 | 0 | 0 | 0 |
| talhamufeed | 4 | 0 | 0 | 3 |
| mglgc | 3 | 0 | 0 | 3 |
| SevenTea7 | 3 | 0 | 0 | 1 |
| FeiLiuEM | 2 | 0 | 0 | 1 |
| hanssli | 2 | 0 | 0 | 1 |
| MJoseMo | 2 | 0 | 0 | 0 |
| cchd0001 | 1 | 0 | 1 | 0 |
| bea1896 | 1 | 0 | 0 | 0 |
| HaiqiChenLab | 1 | 0 | 0 | 1 |
| kotasairohith | 1 | 0 | 0 | 1 |
| shahbazahmed108 | 1 | 0 | 0 | 0 |
| G-Thomson | 1 | 0 | 0 | 1 |
| jingangdidi | 1 | 0 | 0 | 0 |
| LauraNieboer | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue#112bea18962025-12-05 14:02KeyError: 'chrom' during final output merging step
- Issue comment#65kotasairohith2025-09-02 18:04Realign KeyError
- Issue#110jingangdidi2025-08-14 09:06question about function edlib_cigar_to_iterable
- Issue comment#109iprada2025-06-17 15:38what does "killed" mean here in the circle-map realign output (new to coding)
- Issue#109shahbazahmed1082025-06-16 18:11what does "killed" mean here in the circle-map realign output (new to coding)
- Issue#107SevenTea72025-02-20 02:00filter
- Issue comment#108iprada2025-02-19 17:04Repetitive circular DNA guideline
- Issue#108MJoseMo2025-02-19 16:57Repetitive circular DNA guideline
- Issue comment#107SevenTea72025-02-19 01:32filter
- Issue#107SevenTea72025-02-18 01:39filter
- Issue comment#106iprada2025-02-14 15:02Removals of duplicates before using circle-map
- Issue#106MJoseMo2025-02-14 14:59Removals of duplicates before using circle-map
- Issue comment#105iprada2025-02-07 15:53Compatibility with other aligners
- Issue comment#104iprada2025-01-29 17:17Realign process stalls: Excessive BAM unpacking without analysis progression
- Issue#104LauraNieboer2025-01-29 12:35Realign process stalls: Excessive BAM unpacking without analysis progression
- Issue comment#103iprada2024-09-09 10:09OSError: AF_UNIX path too long
- Issue comment#103iprada2024-09-09 09:13OSError: AF_UNIX path too long
- Issue comment#103iprada2024-09-09 08:00OSError: AF_UNIX path too long
- Issue#103newpest2024-09-09 07:53OSError: AF_UNIX path too long
- Issue comment#47G-Thomson2024-08-02 03:00Latest biopython version breaks Alphabet dependency
- Issue comment#102talhamufeed2024-07-31 09:54CRAM support
- Issue comment#102iprada2024-07-31 09:08CRAM support
- Issue comment#102talhamufeed2024-07-30 14:16CRAM support
- Issue comment#102iprada2024-07-30 14:12CRAM support
- Issue comment#102talhamufeed2024-07-30 14:09CRAM support
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 16 stars here means stars gained during the window, not the repo's star count.