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Snakemake pipeline for epigenomic data analysis and integration

active 2025-09-092026-07-20 (UTC)

Complete coverage26,353 / 26,353 hourly files (100%) · 2 absent upstream2023-08-152026-08-17 (UTC)
Events
357
Pushes
311
Pull requests
7
Issues
1
Stars
2
Forks
0

Activity over time

Daily event counts in the loaded window

Line chart, 317 days from 2025-07-24 to 2026-07-20. Pushes: 311 total, peak 26 in a day. Pull requests: 7 total, peak 3 in a day. Issues: 1 total, peak 1 in a day. Comments: 16 total, peak 7 in a day. Stars: 2 total, peak 1 in a day.

  • Pushes
  • Pull requests
  • Issues
  • Comments
  • Stars

Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.

Top contributors

Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity

ContributorContributionsPushesPRsComments
joncahn238216511
eernst1019025

Recent activity

Latest issues, pull requests and releases

  • Issue comment#23eernst2026-05-05 18:31
    Parallelization with DMR caller
  • Issue#30joncahn2026-05-05 07:13
    Warning at the beginning of each rule regarding automatic resource allocation
  • Issue comment#26eernst2026-05-04 16:02
    Incompatibility with Python 3.13?
  • Pull request#20eernst2026-02-04 08:53
  • Issue comment#20eernst2026-02-03 19:37
    Add ATAC-seq support to the pipeline
  • Pull request#18eernst2026-01-26 17:32
  • Releasejoncahn2025-10-31 20:41
    EPICC v0.1.4
  • Pull request#6joncahn2025-10-02 20:47
  • Pull request#5joncahn2025-10-01 21:22
  • Pull request#5joncahn2025-10-01 21:22
  • Pull request#4joncahn2025-10-01 19:12
  • Pull request#3joncahn2025-09-15 14:34
  • Releasejoncahn2025-07-24 16:47
    EPICC v0.1.3

Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 2 stars here means stars gained during the window, not the repo's star count.