A Snakemake workflow for pre-processing single plane illumination microscopy (SPIM, aka lightsheet microscopy)
active 2024-02-20 → 2026-04-07 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 778 days from 2024-02-20 to 2026-04-07. Pushes: 265 total, peak 13 in a day. Pull requests: 75 total, peak 7 in a day. Issues: 30 total, peak 10 in a day. Comments: 29 total, peak 3 in a day. Stars: 6 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| akhanf | 338 | 218 | 66 | 20 |
| github-actions[bot] | 25 | 24 | 1 | 0 |
| Dhananjhay | 15 | 13 | 0 | 2 |
| Copilot | 11 | 6 | 3 | 1 |
| Arshya-Guru | 5 | 1 | 3 | 1 |
| BenGros | 4 | 1 | 2 | 1 |
| copilot-pull-request-reviewer[bot] | 4 | 0 | 0 | 2 |
| m-albert | 1 | 0 | 0 | 1 |
| Karl5766 | 1 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Pull request#72Arshya-Guru2026-03-10 00:48
- Issue comment#71akhanf2026-02-26 18:16add imaris metadata strategy
- Pull request#70Arshya-Guru2026-02-19 16:56
- Issue comment#68Arshya-Guru2026-01-19 17:54Update instances of DirectoryStore
- Pull request#68Arshya-Guru2026-01-19 17:40
- Issue#62akhanf2025-11-29 19:58Add support for session
- Issue comment#34akhanf2025-11-29 19:57Add additional bids microscopy metadata
- Pull request#65akhanf2025-11-12 16:27
- Pull request#64akhanf2025-10-15 03:47
- Pull request#64Copilot2025-10-15 03:36
- Pull request#64Copilot2025-10-15 03:36
- Pull request#64Copilot2025-10-15 03:36
- Issue#62akhanf2025-09-02 15:34Add support for session
- Pull request#61akhanf2025-08-20 02:14
- Issue comment#60akhanf2025-08-20 02:07Multiview stitcher, pixi/conda, CLI, zarr v3, imaris updates
- Issue comment#61Dhananjhay2025-08-19 13:50Pipeline cleanup
- Issue comment#61Dhananjhay2025-08-19 13:47Pipeline cleanup
- Issue comment#60m-albert2025-08-19 08:56Multiview stitcher, pixi/conda, CLI, zarr v3, imaris updates
- Issue comment#61akhanf2025-08-18 19:47Pipeline cleanup
- Issue comment#61akhanf2025-08-18 18:55Pipeline cleanup
- Pull request#59akhanf2025-04-07 11:16
- Pull request#59akhanf2025-04-07 11:15
- Pull request#58akhanf2025-04-01 19:15
- Pull request#58akhanf2025-04-01 18:37
- Pull request#57akhanf2025-02-03 17:58
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 6 stars here means stars gained during the window, not the repo's star count.