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SnakeBIDS app for quantitative analysis of SPIM (lightsheet) brain data

active 2024-06-052026-07-30 (UTC)

Partial coverage20,502 / 26,258 hourly files (78%) · 2 absent upstream · 5,753 failed, retryable2023-08-152026-08-13 (UTC)— sampled evenly across the window, so rankings and trends hold; absolute counts scale up.
Events
680
Pushes
331
Pull requests
114
Issues
26
Stars
4
Forks
0

Activity over time

Daily event counts in the loaded window

Line chart, 786 days from 2024-06-05 to 2026-07-30. Pushes: 331 total, peak 13 in a day. Pull requests: 114 total, peak 9 in a day. Issues: 26 total, peak 6 in a day. Comments: 68 total, peak 11 in a day. Stars: 4 total, peak 1 in a day.

  • Pushes
  • Pull requests
  • Issues
  • Comments
  • Stars

Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.

Top contributors

Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity

ContributorContributionsPushesPRsComments
akhanf2881843931
Copilot174785928
Karl5766644817
Dhananjhay281872
dependabot[bot]6150
amrka1010

Recent activity

Latest issues, pull requests and releases

  • Pull request#168Copilot2026-05-17 03:59
  • Pull request#168Copilot2026-05-17 03:59
  • Pull request#159Copilot2026-05-11 03:26
  • Pull request#157Copilot2026-04-10 23:52
  • Pull request#157Copilot2026-04-10 23:52
  • Issue comment#154akhanf2026-04-10 01:49
    group-level definition of otsu thresholds
  • Pull request#155Copilot2026-04-10 01:44
  • Pull request#155Copilot2026-04-10 01:44
  • Pull request#155Copilot2026-04-10 01:44
  • Issue#154akhanf2026-04-10 01:43
    group-level definition of otsu thresholds
  • Issue#152akhanf2026-04-09 17:18
    get_stains_all_subjects() list order non-deterministic
  • Pull request#153akhanf2026-04-09 17:17
  • Pull request#151Copilot2026-04-07 16:26
  • Pull request#151Copilot2026-04-07 16:26
  • Pull request#147Copilot2026-04-05 10:15
  • Pull request#147Copilot2026-04-05 10:15
  • Pull request#145Copilot2026-04-05 01:27
  • Pull request#146Copilot2026-04-04 23:04
  • Pull request#145Copilot2026-04-04 14:17
  • Pull request#145Copilot2026-04-04 14:17
  • Issue comment#141Copilot2026-04-01 11:21
    Add subject-level visual QC outputs (histogram, segmentation, z-profile, object stats, ROI summaries, vessel overlays)
  • Pull request#140Copilot2026-03-31 01:45
  • Pull request#140Copilot2026-03-31 01:45
  • Issue#101akhanf2026-03-31 01:45
    [Docs] Overview of SPIMquant Workflows and Output Types
  • Issue comment#128akhanf2026-03-30 01:07
    Add dask-cuda LocalCUDACluster support and VesselFM benchmark rule

Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 4 stars here means stars gained during the window, not the repo's star count.