Optimized version of strobealign.
active 2023-08-20 → 2026-08-21 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 1098 days from 2023-08-20 to 2026-08-21. Pushes: 571 total, peak 19 in a day. Pull requests: 219 total, peak 6 in a day. Issues: 114 total, peak 4 in a day. Comments: 603 total, peak 17 in a day. Stars: 83 total, peak 3 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| marcelm | 1K | 461 | 205 | 269 |
| ksahlin | 304 | 21 | 1 | 254 |
| NicolasBuchin | 96 | 76 | 2 | 9 |
| Itolstoganov | 45 | 13 | 2 | 16 |
| drtconway | 14 | 0 | 3 | 6 |
| alugowski | 7 | 0 | 0 | 7 |
| tprodanov | 7 | 0 | 0 | 3 |
| stas-malavin | 5 | 0 | 0 | 4 |
| shiraz-shah | 5 | 0 | 0 | 3 |
| iamh2o | 5 | 0 | 0 | 4 |
| luispedro | 4 | 0 | 2 | 2 |
| Wanli-HE | 4 | 0 | 0 | 3 |
| y9c | 4 | 0 | 0 | 3 |
| yazhinia | 4 | 0 | 0 | 2 |
| Daniel-Liu-c0deb0t | 3 | 0 | 0 | 1 |
| teepean | 3 | 0 | 0 | 2 |
| jakobnissen | 3 | 0 | 0 | 1 |
| fplaza | 3 | 0 | 0 | 1 |
| jtamames | 3 | 0 | 0 | 2 |
| ghuls | 3 | 0 | 0 | 2 |
Recent activity
Latest issues, pull requests and releases
- Pull request#607marcelm2026-08-21 16:03
- Issue comment#24ksahlin2026-06-07 10:59Alignment of long reads
- Issue#24ksahlin2026-06-07 10:59Alignment of long reads
- Pull request#565NicolasBuchin2026-04-20 10:19
- Issue comment#565marcelm2026-04-16 12:37Replace the quadratic paired-mapping search with linear-time sweep
- Pull request#579marcelm2026-04-16 06:38
- Pull request#578marcelm2026-04-09 21:09
- Pull request#574Itolstoganov2026-03-22 23:21
- Issue comment#530SergeWielhouwer2026-03-10 10:39Fix a memory leak when -r is used
- Issue comment#566ksahlin2026-03-05 06:50Perf optimizations
- Pull request#566parlar2026-03-03 21:07
- Issue#536marcelm2026-03-02 12:43Implement FASTA input
- Pull request#564marcelm2026-02-25 18:34
- Issue#562marcelm2026-02-19 22:33Known regressions in the Rust version
- Issue#561marcelm2026-02-19 09:20Use ISA-L even in the Rust version
- Issue comment#251marcelm2026-02-18 21:24Alignment with ksw2/WFA2 - Take 2
- Pull request#555marcelm2026-02-18 17:42
- Issue comment#550marcelm2026-02-13 14:43Piecewise extension for alignments (in rust)
- Issue comment#557NicolasBuchin2026-02-10 16:59PAF files now report number of matching bases on the reference instead of number of matching seeds.
- Pull request#549marcelm2026-02-02 14:56
- Issue comment#546ksahlin2026-01-31 07:50Non-canonical syncmers
- Issue comment#547marcelm2026-01-30 15:46Segmentation fault, pinpointed to one read
- Issue#547tprodanov2026-01-30 12:26Segmentation fault, pinpointed to one read
- Pull request#546marcelm2026-01-30 10:44
- Issue comment#334ksahlin2026-01-29 16:12Duplicate alignments lead to spurious multimappers
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 83 stars here means stars gained during the window, not the repo's star count.