HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1, Kit 14, Ultra-long (UL) reads.
active 2024-01-27 → 2026-06-05 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 861 days from 2024-01-27 to 2026-06-05. Pushes: 33 total, peak 8 in a day. Pull requests: 24 total, peak 3 in a day. Issues: 31 total, peak 2 in a day. Comments: 65 total, peak 3 in a day. Stars: 89 total, peak 4 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| dominikstanojevic | 68 | 27 | 16 | 21 |
| dehui333 | 17 | 6 | 7 | 3 |
| PhDWannaB1030 | 7 | 0 | 0 | 3 |
| wuyiwen-genomics-cn | 4 | 0 | 0 | 3 |
| ItokawaK | 4 | 0 | 0 | 2 |
| JoanJong | 3 | 0 | 0 | 2 |
| fangdongming | 3 | 0 | 0 | 2 |
| dcopetti | 3 | 0 | 0 | 1 |
| bpanda-dev | 2 | 0 | 0 | 1 |
| colindaven | 2 | 0 | 0 | 2 |
| AndreaGuarracino | 2 | 0 | 0 | 1 |
| faulk-lab | 2 | 0 | 0 | 2 |
| mattloose | 2 | 0 | 0 | 1 |
| asan-emirsaleh | 2 | 0 | 0 | 2 |
| tallnuttrbgv | 2 | 0 | 0 | 1 |
| hanqu24 | 2 | 0 | 0 | 2 |
| nponts | 2 | 0 | 0 | 1 |
| peterdfields | 1 | 0 | 0 | 1 |
| xiekunwhy | 1 | 0 | 0 | 1 |
| kevfengler227 | 1 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue#84wlhCNU2026-05-21 01:25How to handle HERRO inference OOM errors on limited-RAM GPU nodes
- Issue comment#21ziczhang2025-12-01 08:29Heterozygous SNP counts for HG002 sample
- Issue#83GuillaumeHolley2025-09-12 10:17Unsupported CIGAR operation when computing inclusive scan
- Issue comment#79wuyiwen-genomics-cn2025-04-27 03:02RUST_BACKTRACE=1 Error Message
- Issue comment#81sirselim2025-04-18 06:52Can Herro be used with cpus instead of gpus
- Issue comment#81Bio-finder2025-04-18 06:27Can Herro be used with cpus instead of gpus
- Issue comment#79PhDWannaB10302025-01-26 16:04RUST_BACKTRACE=1 Error Message
- Issue#75PhDWannaB10302025-01-18 17:18Reads Preprocessing Error Message (Step 1)
- Issue#79PhDWannaB10302025-01-18 16:07RUST_BACKTRACE=1 Error Message
- Issue comment#45PhDWannaB10302025-01-18 16:06`RUST_BACKTRACE=1`
- Issue comment#71josemq2025-01-16 22:42herro inference error
- Issue#75PhDWannaB10302024-12-20 20:22Reads Preprocessing Error Message (Step 1)
- Pull request#74dominikstanojevic2024-12-11 02:34
- Pull request#74dominikstanojevic2024-12-11 02:33
- Issue comment#37xiekunwhy2024-12-10 00:39CPU-only inference
- Issue comment#71dominikstanojevic2024-12-05 06:08herro inference error
- Issue comment#70AndreaGuarracino2024-12-04 04:09Length X is bigger than the tseq Y
- Issue#70AndreaGuarracino2024-12-04 04:09Length X is bigger than the tseq Y
- Issue comment#67kevfengler2272024-11-19 02:45strange length binning?
- Issue comment#65byebrid2024-11-12 04:23conda environment installation issues
- Issue#66unavailable-23742024-11-09 17:03RuntimeError: GET was unable to find an engine to execute this computation
- Pull request#68dehui3332024-11-08 04:44
- Issue comment#62colindaven2024-10-25 06:44Provide an offical docker image
- Issue comment#65sjfleck2024-10-24 20:05conda environment installation issues
- Pull request#63dehui3332024-10-22 07:18
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 89 stars here means stars gained during the window, not the repo's star count.