Mapping pipeline for snmC-seq based technologies.
active 2023-09-25 → 2025-08-12 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 688 days from 2023-09-25 to 2025-08-12. Pushes: 0 total, peak 0 in a day. Pull requests: 1 total, peak 1 in a day. Issues: 13 total, peak 3 in a day. Comments: 3 total, peak 1 in a day. Stars: 8 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| GMFranceschini | 7 | 0 | 0 | 2 |
| mbatiuk | 5 | 0 | 0 | 1 |
| Yoon-Insoo | 2 | 0 | 0 | 0 |
| jksr | 1 | 0 | 1 | 0 |
| MichaelPeibo | 1 | 0 | 0 | 0 |
| TinaXiayanLi | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue#24GMFranceschini2024-11-12 11:50Read name format specification
- Issue comment#23GMFranceschini2024-11-11 14:49Could not retrieve index file for bam file
- Issue#23GMFranceschini2024-11-11 14:49Could not retrieve index file for bam file
- Issue#23GMFranceschini2024-11-08 09:39Could not retrieve index file for bam file
- Issue comment#22GMFranceschini2024-11-08 09:35Problem using picard within mapping env
- Issue#22GMFranceschini2024-11-08 09:35Problem using picard within mapping env
- Issue#22GMFranceschini2024-11-07 21:11Problem using picard within mapping env
- Issue#21mbatiuk2024-04-28 16:07Bug: cutadapt adapter trimming with default 3 bases overlap instead of 6 - bug in Snakemake templates
- Issue comment#16mbatiuk2024-04-26 09:25potential error in yap make-sample-sheet plateinfo_and_samplesheet.py
- Issue#20mbatiuk2024-04-26 08:33pipeline installation fails on pip install allcools - libxcrypt dependency is required
- Issue#19mbatiuk2024-04-26 08:30outdated manual at https://hq-1.gitbook.io/mc
- Issue#18mbatiuk2024-04-26 08:17bismark_reference is not defined in Snakefile
- Issue#17Yoon-Insoo2024-03-28 04:27yap: error: unrecognized arguments (yap start-from-cell-fastq)
- Issue#17Yoon-Insoo2024-03-15 13:24yap: error: unrecognized arguments
- Issue#16MichaelPeibo2024-01-25 16:48potential error in yap make-sample-sheet plateinfo_and_samplesheet.py
- Issue#15TinaXiayanLi2023-11-01 19:54Value Error rised when running default-mapping-config
- Pull request#14jksr2023-09-25 21:00
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 8 stars here means stars gained during the window, not the repo's star count.