repo for DynamicBind: Predicting ligand-specific protein-ligand complex structure with a deep equivariant generative model
Jupyter Notebook · active 2024-04-19 → 2026-05-24 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 766 days from 2024-04-19 to 2026-05-24. Pushes: 1 total, peak 1 in a day. Pull requests: 1 total, peak 1 in a day. Issues: 23 total, peak 2 in a day. Comments: 25 total, peak 3 in a day. Stars: 91 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| patjiang | 6 | 0 | 0 | 6 |
| CLG68 | 4 | 0 | 0 | 2 |
| luwei0917 | 4 | 1 | 0 | 2 |
| liyue9129 | 4 | 0 | 0 | 3 |
| wh277 | 4 | 0 | 0 | 0 |
| Nobody-Zhang | 3 | 0 | 0 | 3 |
| cureheavy | 3 | 0 | 0 | 3 |
| aleff-ferreira | 2 | 0 | 0 | 2 |
| agarrubio | 2 | 0 | 0 | 1 |
| rjrich | 2 | 0 | 0 | 1 |
| Kimi-Dai | 2 | 0 | 0 | 1 |
| dbh25-10120-cloud | 1 | 0 | 1 | 0 |
| zersalsion | 1 | 0 | 0 | 0 |
| bwang-ecnu | 1 | 0 | 0 | 0 |
| Le-Phung-Hien | 1 | 0 | 0 | 0 |
| MaximePolicarpo | 1 | 0 | 0 | 0 |
| Ruibin-Liu | 1 | 0 | 0 | 0 |
| ballaneypranav | 1 | 0 | 0 | 0 |
| aTMRz | 1 | 0 | 0 | 1 |
| TangYiChing | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Pull request#58dbh25-10120-cloud2025-12-23 09:36
- Issue comment#22CLG682025-06-12 21:09problem: No compatible CUDA device is available
- Issue#22CLG682025-06-12 21:09problem: No compatible CUDA device is available
- Issue comment#22cureheavy2025-06-12 21:00problem: No compatible CUDA device is available
- Issue comment#22cureheavy2025-06-12 19:54problem: No compatible CUDA device is available
- Issue comment#41cureheavy2025-05-29 22:21ValueError: Encountered valid chain id that was not present in the LM embeddings
- Issue#54rjrich2025-05-03 21:21Disconnected Residues in Non-Relaxed Receptor PDB Output
- Issue comment#45rjrich2025-04-27 14:01Is there a way to keep one cofactor in the protein structure and dock another ligand to it?
- Issue#50diaoyitan2025-04-19 08:47RuntimeError: PytorchStreamReader failed reading zip archive: failed finding central directory
- Issue#49wh2772025-04-05 13:22some SSMILES loading failed
- Issue#47wh2772025-04-03 05:41Issue with multi-GPU processing
- Issue#46wh2772025-04-03 05:38Issue with multi-GPU processing
- Issue#45Yang-Wang-20202025-02-20 00:41Is there a way to keep one cofactor in the protein structure and dock another ligand to it?
- Issue comment#44patjiang2025-01-10 22:22Compare affinity scores for different proteins
- Issue#44MaximePolicarpo2025-01-08 07:53Compare affinity scores for different proteins
- Issue#43Kimi-Dai2025-01-07 03:17LM embeddings for complex did not have the right length for the protein
- Issue comment#38Kimi-Dai2025-01-07 03:14LM embeddings for complex did not have the right length for the protein
- Issue comment#42patjiang2024-12-20 04:27How to Perform Protein-Protein Docking?
- Issue comment#36aTMRz2024-12-06 03:58Files for split_train, split_valid, and split_test arguments
- Issue#401241892024-11-29 02:36how to get the rmsd?
- Issue#38liyue91292024-11-29 01:44LM embeddings for complex did not have the right length for the protein
- Issue comment#38liyue91292024-11-29 01:44LM embeddings for complex did not have the right length for the protein
- Issue comment#38liyue91292024-11-28 02:26LM embeddings for complex did not have the right length for the protein
- Issue comment#38liyue91292024-11-16 02:10LM embeddings for complex did not have the right length for the protein
- Issue comment#37patjiang2024-10-26 21:28Same protein, same substrate, but with different affinities in docking results
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 91 stars here means stars gained during the window, not the repo's star count.