Analyse MalariaGEN data from Python
active 2024-10-23 → 2026-07-08 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 624 days from 2024-10-23 to 2026-07-08. Pushes: 334 total, peak 12 in a day. Pull requests: 130 total, peak 10 in a day. Issues: 145 total, peak 15 in a day. Comments: 373 total, peak 14 in a day. Stars: 10 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| jonbrenas | 298 | 125 | 5 | 74 |
| leehart | 167 | 58 | 11 | 47 |
| github-actions[bot] | 124 | 96 | 0 | 0 |
| adilraza99 | 50 | 0 | 15 | 31 |
| tristanpwdennis | 50 | 21 | 7 | 15 |
| mohamed-laarej | 47 | 19 | 8 | 18 |
| alimanfoo | 30 | 5 | 3 | 13 |
| blankirigaya | 21 | 0 | 12 | 8 |
| 31puneet | 19 | 0 | 6 | 13 |
| khushthecoder | 18 | 0 | 7 | 10 |
| ahernank | 15 | 2 | 0 | 6 |
| Tanisha127 | 15 | 0 | 6 | 9 |
| sanjaynagi | 14 | 6 | 0 | 6 |
| Copilot | 12 | 0 | 0 | 5 |
| kunal-10-cloud | 12 | 0 | 3 | 7 |
| suhr25 | 11 | 0 | 2 | 9 |
| codecov[bot] | 11 | 0 | 0 | 11 |
| jwgarber | 10 | 0 | 0 | 9 |
| Sharon-codes | 9 | 0 | 2 | 7 |
| rehanxt5 | 9 | 0 | 3 | 5 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#963jonbrenas2026-05-27 14:13Allow G123 to run without phasing analysis when no default phasing exists
- Issue#1328github-actions[bot]2026-05-27 08:23`pca`'s `cohorts` argument does not work the way it may expected to.
- Issue comment#1288adilraza992026-04-28 15:41`diversity_stats` doesn't have a `max_cohort_size` parameter
- Issue comment#955Tanisha1272026-04-28 04:13Add optional Hampel filter support to H12 functions
- Pull request#1320nw202026-04-27 10:49
- Issue comment#1290codecov[bot]2026-04-26 19:55fix: expose cohort size parameters in diversity_stats
- Issue comment#1304khushthecoder2026-04-18 16:14fix: add retry, timeout, and backoff defaults for cloud storage access
- Issue#1313github-actions[bot]2026-04-18 14:05cnv_frq.py Hardcodes X-Chromosome Sex-Linked Ploidy Assumption — Breaks CNV Frequency Analysis for Non-Gambiae Species
- Issue comment#1311kunal-10-cloud2026-04-18 09:10ipinfo Location Check Silently Swallows All Network Errors With No Logging or Fallback Notification
- Issue#1311github-actions[bot]2026-04-18 08:57ipinfo Location Check Silently Swallows All Network Errors With No Logging or Fallback Notification
- Issue comment#105131puneet2026-04-18 04:53feat: enhance biallelic_snps_to_plink with sex calls, phenotypes, and…
- Issue comment#29331puneet2026-04-15 06:32Implement Population Branch statistic (PBS)
- Issue comment#1257tristanpwdennis2026-04-13 12:07Add As1 support
- Issue comment#96431puneet2026-04-13 06:09Add dataset-return options for SNP counts/diplotypes and remove duplicates
- Pull request#1286Tanisha1272026-04-12 19:28
- Issue comment#1284Yashsingh0452026-04-10 14:25Fix #1283: Warn and handle missing FORMAT fields in snp_calls_to_vcf()
- Pull request#1284Yashsingh0452026-04-10 14:20
- Issue#1280khushthecoder2026-04-10 09:35snp_calls_to_vcf() — Python-level per-sample loop creates severe performance bottleneck for large cohorts
- Issue comment#997shauryam28072026-04-10 06:59Normalize taxon_by handling to match area_by/period_by in cohort grouping
- Issue comment#366jonbrenas2026-04-10 05:31Anopheles refactor
- Issue comment#1278adilraza992026-04-09 14:43refactor: migrate karyotype tag loading to GCS and add simulated tests
- Issue comment#1257tristanpwdennis2026-04-07 10:12Add As1 support
- Pull request#1277khushthecoder2026-04-07 06:04
- Issue comment#1270blankirigaya2026-04-06 11:22fix: suppress misleading KeyError chain in _locate_site_class`
- Issue comment#1257tristanpwdennis2026-04-06 05:23Add As1 support
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 10 stars here means stars gained during the window, not the repo's star count.