Fast genome and metagenome distance estimation using MinHash
active 2023-08-28 → 2026-04-14 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 961 days from 2023-08-28 to 2026-04-14. Pushes: 3 total, peak 3 in a day. Pull requests: 1 total, peak 1 in a day. Issues: 7 total, peak 1 in a day. Comments: 16 total, peak 2 in a day. Stars: 74 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| ondovb | 4 | 3 | 0 | 1 |
| sheikki | 2 | 0 | 0 | 2 |
| Louis-MG | 2 | 0 | 0 | 0 |
| Vikash84 | 2 | 0 | 0 | 2 |
| jeffkimbrel | 1 | 0 | 0 | 1 |
| pickettbd | 1 | 0 | 0 | 1 |
| vvsbiocode | 1 | 0 | 0 | 0 |
| dayaofeijihuhuhu | 1 | 0 | 0 | 1 |
| mahmudhera | 1 | 0 | 0 | 1 |
| kbessonov1984 | 1 | 0 | 0 | 1 |
| APrabhu21 | 1 | 0 | 0 | 1 |
| Katterinne | 1 | 0 | 0 | 1 |
| sujeetpowar | 1 | 0 | 0 | 1 |
| tmaklin | 1 | 0 | 1 | 0 |
| gbdias | 1 | 0 | 0 | 1 |
| stubrown | 1 | 0 | 0 | 0 |
| diekhans | 1 | 0 | 0 | 0 |
| macklor | 1 | 0 | 0 | 1 |
| yanyew | 1 | 0 | 0 | 0 |
| kdc10 | 1 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#184Katterinne2026-03-06 02:45WARNING: The option p will be ignored with r.
- Issue comment#9Vikash842025-04-29 23:33Option to produce PHYLIP distance matrix format
- Issue comment#9Vikash842025-04-29 23:32Option to produce PHYLIP distance matrix format
- Issue comment#184dayaofeijihuhuhu2024-12-22 03:13WARNING: The option p will be ignored with r.
- Issue#185stubrown2024-11-26 19:54all-vs-all kmer sharing and mash distances for a set of proteins
- Issue comment#150jeffkimbrel2024-10-18 15:36Error in mash sketch
- Issue#184yanyew2024-10-18 14:33WARNING: The option p will be ignored with r.
- Issue#183vvsbiocode2024-06-26 20:39The match is inconsistent with sketch size
- Issue comment#181pickettbd2024-06-07 18:45Fix compilation issue (add missing #include <limits>)
- Issue comment#31APrabhu212024-05-04 07:03Problems compiling with capnp
- Issue comment#150macklor2023-12-24 16:58Error in mash sketch
- Issue#182diekhans2023-12-07 19:27Add brief description about what MASH does to the README.md
- Issue comment#150sujeetpowar2023-12-05 12:02Error in mash sketch
- Issue comment#162ondovb2023-11-16 16:22output the containment sequence
- Issue comment#162gbdias2023-11-16 15:20output the containment sequence
- Issue comment#162kdc102023-11-09 15:43output the containment sequence
- Issue comment#179sheikki2023-11-08 07:49Argument list too long
- Issue comment#172sheikki2023-11-07 18:02Can Mash accurately classify subspecies?
- Pull request#181tmaklin2023-10-26 10:37
- Issue#180Louis-MG2023-09-21 15:18Distance between two genomes not consistent when I chnage the rest of the dataset.
- Issue#180Louis-MG2023-09-20 18:09Distance between two genomes not consistent when I chnage the rest of the dataset.
- Issue comment#161kbessonov19842023-09-19 19:36Update RefSeq?
- Issue#179Lil-52023-09-18 08:29Argument list too long
- Issue comment#175mahmudhera2023-08-28 16:18Explanation of the .msh format
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 74 stars here means stars gained during the window, not the repo's star count.