SALSA: A tool to scaffold long read assemblies with Hi-C data
active 2023-08-15 → 2025-07-11 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 697 days from 2023-08-15 to 2025-07-11. Pushes: 2 total, peak 2 in a day. Pull requests: 5 total, peak 4 in a day. Issues: 15 total, peak 3 in a day. Comments: 16 total, peak 5 in a day. Stars: 24 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
Recent activity
Latest issues, pull requests and releases
- Issue comment#182dgs1082024-07-17 17:03Similar number of scaffolds to contigs
- Issue comment#182skoren2024-07-17 16:57Similar number of scaffolds to contigs
- Issue#182dgs1082024-07-17 16:38Similar number of scaffolds to contigs
- Pull request#181skoren2024-05-17 20:05
- Issue comment#179skoren2024-05-17 20:04AGP file has 500bp gaps labelled as "scaffold" with linkage asserted but "na" given for linkage evidence
- Issue#179skoren2024-05-17 20:04AGP file has 500bp gaps labelled as "scaffold" with linkage asserted but "na" given for linkage evidence
- Pull request#181skoren2024-05-17 20:03
- Issue comment#127skoren2024-05-17 20:00AGP Output Update
- Pull request#127skoren2024-05-17 20:00
- Pull request#178skoren2024-05-17 19:59
- Issue#180foreignsand2024-05-04 00:01Single Restriction Enzyme Used for HiC Preparation
- Issue comment#180foreignsand2024-05-04 00:01Single Restriction Enzyme Used for HiC Preparation
- Issue#180foreignsand2024-05-04 00:01Single Restriction Enzyme Used for HiC Preparation
- Issue#180foreignsand2024-05-04 00:00Single Restriction Enzyme Used for HiC Preparation
- Issue comment#180foreignsand2024-05-04 00:00Single Restriction Enzyme Used for HiC Preparation
- Issue#180foreignsand2024-05-03 23:58Single Restriction Enzyme Used for HiC Preparation
- Issue#179dgs1082024-04-23 21:43AGP file has 500bp gaps labelled as "scaffold" with linkage asserted by NA given for linkage evidence
- Issue comment#175skoren2024-03-06 15:57Hi-C links not loading
- Issue#175skoren2024-03-06 15:56Hi-C links not loading
- Issue comment#177skoren2024-03-06 15:55Improving Trio-binning assembly using SALSA2
- Issue comment#177Larkinhi2024-02-23 02:50Improving Trio-binning assembly using SALSA2
- Issue comment#177skoren2024-02-22 15:01Improving Trio-binning assembly using SALSA2
- Issue comment#177Larkinhi2024-02-21 18:01Improving Trio-binning assembly using SALSA2
- Pull request#178skoren2024-02-21 15:39
- Issue comment#171skoren2024-02-21 15:24If a FASTA file has “V” sequence, the following error occurred
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 24 stars here means stars gained during the window, not the repo's star count.