Pipeline for efficient genomic data processing.
active 2023-11-05 → 2026-08-10 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 1010 days from 2023-11-05 to 2026-08-10. Pushes: 642 total, peak 41 in a day. Pull requests: 147 total, peak 17 in a day. Issues: 73 total, peak 5 in a day. Comments: 156 total, peak 17 in a day. Stars: 25 total, peak 3 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| d-laub | 836 | 597 | 117 | 70 |
| bschilder | 89 | 3 | 2 | 65 |
| pre-commit-ci[bot] | 41 | 32 | 9 | 0 |
| Copilot | 30 | 0 | 0 | 9 |
| Jaureguy760 | 25 | 9 | 14 | 1 |
| Al-Murphy | 9 | 0 | 1 | 7 |
| jackdesmarais | 6 | 0 | 3 | 3 |
| adamyhe | 3 | 0 | 0 | 1 |
| VincentLHH | 1 | 0 | 0 | 0 |
| Fahimehgit | 1 | 0 | 1 | 0 |
Recent activity
Latest issues, pull requests and releases
- Pull request#224d-laub2026-06-14 02:20
- Issue#222d-laub2026-06-14 00:45Feature: unphased / ploidy-1 union variant-windows view for haploid (somatic) modeling
- Issue#221d-laub2026-06-13 23:18Perf: Reference.fetch dominated by numba parallel=True fork-join overhead in variant-windows path (~37ms/call for tiny windows); also 3 redundant fetches/decode
- Pull request#215d-laub2026-06-13 06:33
- Pull request#209d-laub2026-06-08 01:04
- Issue#191d-laub2026-05-24 06:10Dosage field attached to Variants source even when not requested (regression?)
- Pull request#190d-laub2026-05-24 05:57
- Pull request#189d-laub2026-05-24 04:25
- Pull request#183d-laub2026-05-23 21:37
- Issue#176bschilder2026-05-22 01:18Dataset.open(splice_info, var_filter) breaks choose_exonic_variants; with_settings(splice_info, var_filter) works
- Pull request#174d-laub2026-05-21 22:28
- Issue#159bschilder2026-05-11 17:31`gvl.write` sample/genotype alignment desyncs when input VCF samples aren't alphabetical
- Issue#155d-laub2026-04-28 23:13Request pre-built aarch64 wheel for Python 3.12
- Issue comment#155d-laub2026-04-28 23:13Request pre-built aarch64 wheel for Python 3.12
- Pull request#154d-laub2026-04-22 05:33
- Issue#153VincentLHH2026-04-22 02:29Ragged haplotype sequences are unexpectedly truncated at the 3' end
- Pull request#151bschilder2026-04-20 05:41
- Released-laub2025-12-20 18:550.19.1
- Pull request#147d-laub2025-12-20 05:33
- Pull request#146pre-commit-ci[bot]2025-12-08 20:38
- Pull request#143pre-commit-ci[bot]2025-11-24 20:34
- Pull request#142pre-commit-ci[bot]2025-11-10 20:38
- Released-laub2025-11-09 04:270.18.3
- Pull request#141d-laub2025-11-09 04:16
- Released-laub2025-11-03 04:280.18.2
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 25 stars here means stars gained during the window, not the repo's star count.