An R package for analyzing microbiome data
active 2024-02-28 → 2026-02-17 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 721 days from 2024-02-28 to 2026-02-17. Pushes: 68 total, peak 5 in a day. Pull requests: 20 total, peak 3 in a day. Issues: 23 total, peak 12 in a day. Comments: 23 total, peak 9 in a day. Stars: 0 total, peak 0 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| d-callan | 84 | 41 | 14 | 14 |
| asizemore | 28 | 4 | 4 | 8 |
| github-actions[bot] | 16 | 16 | 0 | 0 |
| bobular | 6 | 4 | 1 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#35d-callan2025-12-18 20:05Use Remotes to install Maaslin2
- Pull request#36bobular2025-12-18 19:27
- Issue comment#35bobular2025-12-18 19:15Use Remotes to install Maaslin2
- Issue#28d-callan2025-11-21 14:59Import deseq from veupathUtils
- Pull request#32asizemore2025-07-21 19:12
- Issue#30asizemore2025-04-16 12:05Negative values check checks more than the numbers
- Pull request#31asizemore2025-04-16 12:05
- Pull request#31asizemore2025-04-15 22:11
- Issue#30asizemore2025-04-15 21:28Negative values check checks more than the numbers
- Pull request#29asizemore2025-04-13 13:48
- Pull request#29asizemore2025-04-13 13:26
- Issue#28asizemore2024-10-31 22:20Import deseq from veupathUtils
- Issue#27d-callan2024-10-02 18:10add support for splinectomer
- Issue comment#26asizemore2024-09-20 20:56move isCutoff in rankedAbundance to computationDetails
- Issue#26asizemore2024-09-20 20:48move isCutoff in rankedAbundance to computationDetails
- Issue comment#15d-callan2024-09-17 14:40break beta div into two computations
- Issue comment#15d-callan2024-09-17 14:39break beta div into two computations
- Issue comment#15asizemore2024-09-17 13:32break beta div into two computations
- Issue comment#25asizemore2024-09-10 20:33Improper AbundanceData object created in diff abund
- Issue comment#25asizemore2024-08-19 21:32Improper AbundanceData object created in diff abund
- Issue comment#24d-callan2024-08-13 17:09sparcc returning missing as correlation result
- Issue#24d-callan2024-08-13 17:09sparcc returning missing as correlation result
- Issue comment#24asizemore2024-08-12 21:25sparcc returns no results?
- Issue#25asizemore2024-08-12 20:55Improper AbundanceData object created in diff abund
- Issue#24asizemore2024-07-15 18:03sparcc returns no results?
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 0 stars here means stars gained during the window, not the repo's star count.