The pipeline takes in sequencing files (single- or paired-end) and profiles them using multiple taxonomic classification tools
active 2023-10-14 → 2026-05-22 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 952 days from 2023-10-14 to 2026-05-22. Pushes: 32 total, peak 8 in a day. Pull requests: 5 total, peak 2 in a day. Issues: 11 total, peak 2 in a day. Comments: 31 total, peak 6 in a day. Stars: 0 total, peak 0 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| aclum | 30 | 2 | 2 | 13 |
| mflynn-lanl | 17 | 14 | 0 | 2 |
| kaijli | 10 | 0 | 0 | 8 |
| chienchi | 10 | 8 | 0 | 1 |
| vlilanl | 9 | 5 | 0 | 3 |
| eecavanna | 8 | 2 | 2 | 1 |
| poeli | 4 | 1 | 1 | 2 |
| Michal-Babins | 3 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Pull request#39aclum2026-02-19 19:57
- Releasegithub-actions[bot]2025-11-24 17:26
- Issue comment#37chienchi2025-11-20 19:59import singleM from JGI gitlab and add singleM call.
- Issue comment#36aclum2025-10-31 20:41Replace current read based workflows with singleM
- Issue#36aclum2025-10-31 20:41Replace current read based workflows with singleM
- Issue#36aclum2025-08-21 16:32Replace current read based workflows with singleM
- Issue comment#35vlilanl2025-05-29 20:19Update index.rst
- Issue comment#35kaijli2025-05-27 15:46Update index.rst
- Issue comment#34eecavanna2025-03-06 00:45Documentation contains broken link to `fastq.gz` file (ReadbasedAnalysis repo)
- Issue#34eecavanna2025-03-06 00:45Documentation contains broken link to `fastq.gz` file (ReadbasedAnalysis repo)
- Issue comment#34kaijli2025-03-06 00:41Documentation contains broken link to `fastq.gz` file (ReadbasedAnalysis repo)
- Pull request#31poeli2025-01-15 00:22
- Issue#29eecavanna2024-12-14 06:33Define `github_url` in `docs/index.rst` to enable "Edit on GitHub" link
- Pull request#30eecavanna2024-12-14 06:33
- Pull request#30eecavanna2024-12-14 06:32
- Issue#29eecavanna2024-12-14 06:27Define `github_url` in 2_Read_Based_Taxonomy
- Issue comment#27aclum2024-11-22 00:15update readbased analysis documentation
- Issue comment#27kaijli2024-11-22 00:12update readbased analysis documentation
- Issue comment#23vlilanl2024-07-12 17:47review and delete old branches
- Issue#23vlilanl2024-07-12 17:47review and delete old branches
- Issue comment#22aclum2024-07-02 20:22Update to V1 #19
- Releasegithub-actions[bot]2024-06-25 22:37
- Issue#19aclum2024-06-25 22:00update-v1
- Pull request#22aclum2024-06-25 22:00
- Issue comment#23poeli2024-06-22 19:59review and delete old branches
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 0 stars here means stars gained during the window, not the repo's star count.