This is the alpha version of the CellOracle package
active 2023-10-03 → 2026-05-08 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 949 days from 2023-10-03 to 2026-05-08. Pushes: 15 total, peak 4 in a day. Pull requests: 3 total, peak 1 in a day. Issues: 45 total, peak 3 in a day. Comments: 48 total, peak 3 in a day. Stars: 104 total, peak 3 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| KenjiKamimoto-wustl122 | 19 | 7 | 0 | 8 |
| KenjiKamimoto-ac | 8 | 8 | 0 | 0 |
| yojetsharma | 5 | 0 | 0 | 3 |
| A-legac45 | 5 | 0 | 0 | 1 |
| zjprookie | 4 | 0 | 0 | 1 |
| iichelhadi | 4 | 0 | 0 | 2 |
| momur | 4 | 0 | 0 | 3 |
| Fucicii | 3 | 0 | 0 | 3 |
| NN0412 | 3 | 0 | 0 | 3 |
| baoa2ta | 3 | 0 | 0 | 3 |
| xiaomaolxc | 2 | 0 | 0 | 0 |
| xmuhuanglab | 2 | 0 | 0 | 0 |
| debashish19211 | 2 | 0 | 0 | 1 |
| njrobins | 2 | 0 | 0 | 1 |
| zqfang | 2 | 0 | 0 | 2 |
| YangLi-Bio | 2 | 0 | 0 | 0 |
| YuJiandongBio | 1 | 0 | 0 | 0 |
| Roger-GOAT | 1 | 0 | 0 | 1 |
| unaginekomoyashi | 1 | 0 | 0 | 1 |
| polinaderev | 1 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#134ruiqiizhou2026-02-19 22:22oracle.get_mcmc_cell_transition_table
- Issue comment#143pavsol2026-02-12 10:18Non-uniform simulate_shift
- Pull request#240ddiez2025-12-10 05:47
- Issue#238A-legac452025-09-05 08:54isolate after a pertubation its impasct on the different genes
- Issue comment#236cconnors82025-09-03 19:58Scalability Issues of CellOracle
- Issue#237yasin-uzun2025-09-02 01:25Are the p-values that are generated with get_links function adjusted for multiple testing?
- Issue comment#172narein972025-07-05 21:54Error with oracle.import_anndata_as_raw_count
- Issue comment#125polinaderev2025-06-20 14:13Problems with reference genome for construction of base GRN from scATAC data
- Issue comment#202aneeshkd2025-01-31 01:00GimmeMotifs installed but can't install celloracle because of 'Failed building wheel for gimmemotifs'
- Issue#224YangLi-Bio2025-01-18 09:56Failed to run ma.get_tss_info
- Issue#223YangLi-Bio2025-01-17 06:58ma.SUPPORTED_REF_GENOME for new reference genome: soybean (Glycine max) William 82 v4
- Pull request#222dakesan2025-01-13 01:29
- Issue comment#207wangxuann19952025-01-03 14:26The Kernel crashed when I run tfi.scan
- Issue comment#207NN04122024-12-15 08:19The Kernel crashed when I run tfi.scan
- Issue comment#216NN04122024-12-15 08:18Scan motifs error! tfi.scan(fpr=0.02,motifs=motifs, verbose=True)
- Issue comment#214NN04122024-12-15 08:15ImportError: cannot import name 'default_motifs' from 'gimmemotifs.motif'
- Issue#220YuJiandongBio2024-11-03 15:35ma.SUPPORTED_REF_GENOME for new chicken genome: GRCg7b
- Issue comment#207baoa2ta2024-10-20 12:04The Kernel crashed when I run tfi.scan
- Issue comment#174baoa2ta2024-10-20 11:59The kernel keep dying during TF motif scan.
- Issue comment#214baoa2ta2024-10-20 11:51ImportError: cannot import name 'default_motifs' from 'gimmemotifs.motif'
- Issue comment#158PedroMBarcelos2024-10-09 21:32ImportError: cannot import name 'default_motifs' from 'gimmemotifs.motif'
- Issue comment#216zjprookie2024-09-29 06:24Scan motifs error! tfi.scan(fpr=0.02,motifs=motifs, verbose=True)
- Issue#216zjprookie2024-09-29 06:16Scan motifs error! tfi.scan(fpr=0.02,motifs=motifs, verbose=True)
- Issue#216zjprookie2024-09-29 06:16Scan motifs error! tfi.scan(fpr=0.02,motifs=motifs, verbose=True)
- Issue#216zjprookie2024-09-29 06:14Scan motifs error! tfi.scan(fpr=0.02,motifs=motifs, verbose=True)
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 104 stars here means stars gained during the window, not the repo's star count.