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mortazavilab/TranscriptClean

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Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome

active 2023-09-102025-11-10 (UTC)

Partial coverage20,511 / 26,267 hourly files (78%) · 2 absent upstream · 5,753 failed, retryable2023-08-152026-08-13 (UTC)— sampled evenly across the window, so rankings and trends hold; absolute counts scale up.
Events
21
Pushes
3
Pull requests
0
Issues
3
Stars
11
Forks
1

Activity over time

Daily event counts in the loaded window

Line chart, 793 days from 2023-09-10 to 2025-11-10. Pushes: 3 total, peak 2 in a day. Pull requests: 0 total, peak 0 in a day. Issues: 3 total, peak 2 in a day. Comments: 1 total, peak 1 in a day. Stars: 11 total, peak 5 in a day.

  • Pushes
  • Pull requests
  • Issues
  • Comments
  • Stars

Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.

Top contributors

Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity

ContributorContributionsPushesPRsComments
gzjtest3001
fairliereese3300
tabatakenshiro1000

Recent activity

Latest issues, pull requests and releases

  • Issue#43tabatakenshiro2025-03-13 04:59
    Significant Read Reduction in Specific Samples After Running TranscriptClean
  • Issue#39gzjtest2024-09-26 11:10
    log, sam and fa files do not exist in TC_tmp folder but in its parent folder.
  • Issue comment#39gzjtest2024-09-26 11:06
    log, sam and fa files do not exist in TC_tmp folder but in its parent folder.
  • Issue#39gzjtest2024-09-26 10:58
    log, sam and fa files do not exist in TC_tmp folder but in its parent folder.
  • Releasefairliereese2024-01-30 23:31
    TranscriptClean v2.1

Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 11 stars here means stars gained during the window, not the repo's star count.