msk access data analysis nextflow pipeline
active 2025-07-15 → 2026-04-16 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 276 days from 2025-07-15 to 2026-04-16. Pushes: 37 total, peak 5 in a day. Pull requests: 4 total, peak 2 in a day. Issues: 11 total, peak 6 in a day. Comments: 3 total, peak 1 in a day. Stars: 0 total, peak 0 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| kanika-arora | 32 | 19 | 1 | 2 |
| shguturu | 15 | 13 | 2 | 0 |
| gitbook-com[bot] | 5 | 5 | 0 | 0 |
| buehlere | 2 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Pull request#30shguturu2025-11-04 17:36
- Pull request#28shguturu2025-11-04 17:23
- Issue#25kanika-arora2025-09-26 03:23Germline filter and hotspot based filters not implemented in the fix/snv_indel_2025-08-21 branch
- Issue#25kanika-arora2025-09-22 17:32Germline filter and hotspot based filters not implemented in the fix/snv_indel_2025-08-21 branch
- Issue comment#24buehlere2025-09-16 14:38Use GBCMS directly instead of genotype variants
- Issue#24buehlere2025-09-11 14:46Use GBCMS directly instead of genotype variants
- Issue#19kanika-arora2025-08-19 21:47GetBaseCountsMultiSample path hardcoded in GENOTYPE_VARIANTS/main.nf
- Issue#18kanika-arora2025-08-19 21:03MSI score selection for clinical ACCESS when multiple values present
- Issue comment#17kanika-arora2025-08-19 20:46Missing/incorrect columns in SNV/indel final output files
- Issue#16kanika-arora2025-08-19 16:51ACCESS CNA call is "RESCUE" even though fold change >2
- Issue#15kanika-arora2025-08-19 16:29Create utils.py for common functions across multiple python scripts
- Issue#14kanika-arora2025-08-19 13:24None tuple output in filter_calls step
- Issue#13kanika-arora2025-08-19 13:20Include and Exclude optional inputs not handled properly
- Issue#5kanika-arora2025-08-13 15:32Use multiple threads for genotype_variants
- Pull request#2kanika-arora2025-08-13 15:26
- Issue#4kanika-arora2025-08-13 15:25Remove input & output parameters from juno config file
- Issue comment#3kanika-arora2025-08-08 20:11Refactor generate_maf.py
- Pull request#2kanika-arora2025-07-23 17:09
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 0 stars here means stars gained during the window, not the repo's star count.