Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.
active 2023-08-21 → 2026-05-06 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 990 days from 2023-08-21 to 2026-05-06. Pushes: 0 total, peak 0 in a day. Pull requests: 0 total, peak 0 in a day. Issues: 16 total, peak 2 in a day. Comments: 17 total, peak 3 in a day. Stars: 31 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| veseshan | 8 | 0 | 0 | 8 |
| ahwanpandey | 4 | 0 | 0 | 3 |
| ehhfy | 3 | 0 | 0 | 2 |
| THT-sleepy | 3 | 0 | 0 | 0 |
| karolina16 | 3 | 0 | 0 | 0 |
| Rashesh7 | 2 | 0 | 0 | 0 |
| michelle-jahja | 2 | 0 | 0 | 1 |
| bwubb | 1 | 0 | 0 | 1 |
| Fenne-FU | 1 | 0 | 0 | 0 |
| baoyl818 | 1 | 0 | 0 | 1 |
| apallav21 | 1 | 0 | 0 | 0 |
| tanayb001 | 1 | 0 | 0 | 0 |
| allthetime115 | 1 | 0 | 0 | 0 |
| jiwonhong95 | 1 | 0 | 0 | 0 |
| zxclovezby | 1 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue#206tanayb0012025-01-25 08:27Data normalisation, Annotate FACETS output and how to identify tandem duplication pattern
- Issue#205Fenne-FU2024-12-02 07:24Issues in FACETS Tumor Purity Estimation with Nanopore Sequencing Data
- Issue comment#204veseshan2024-11-22 19:03Purity values NA and suggestions?
- Issue comment#203veseshan2024-11-22 19:00snp-pileup for mm10/GRCm38 mouse
- Issue#204jiwonhong952024-11-20 08:10Purity values NA and suggestions?
- Issue comment#202veseshan2024-11-06 01:13Enquiry on consistent segments amplified/deleted across most samples
- Issue comment#202michelle-jahja2024-11-05 22:14Enquiry on consistent segments amplified/deleted across most samples
- Issue comment#203ahwanpandey2024-11-05 03:58snp-pileup for mm10/GRCm38 mouse
- Issue comment#203ahwanpandey2024-11-05 02:32snp-pileup for mm10/GRCm38 mouse
- Issue comment#202veseshan2024-11-04 14:51Enquiry on consistent segments amplified/deleted across most samples
- Issue comment#203veseshan2024-11-04 14:46snp-pileup for mm10/GRCm38 mouse
- Issue comment#203ahwanpandey2024-11-04 04:06snp-pileup for mm10/GRCm38 mouse
- Issue#203ahwanpandey2024-11-03 22:29snp-pileup for mm10/GRCm38 mouse
- Issue#202michelle-jahja2024-10-01 06:36Enquiry on consistent segments amplified/deleted across most samples
- Issue comment#201ehhfy2024-09-30 19:29How to resolve variability in results due to different random seeds?
- Issue comment#201veseshan2024-09-25 19:44How to resolve variability in results due to different random seeds?
- Issue comment#201ehhfy2024-09-25 17:29How to resolve variability in results due to different random seeds?
- Issue comment#201veseshan2024-09-25 14:19How to resolve variability in results due to different random seeds?
- Issue#201ehhfy2024-09-19 20:49How to resolve variability in results due to different random seeds?
- Issue comment#200veseshan2024-06-26 19:00mm39 in the preProcSample {facets}
- Issue#199karolina162024-06-26 15:25Incorrect plots with purity=NA
- Issue#200karolina162024-06-26 13:46mm39 in the preProcSample {facets}
- Issue#199karolina162024-06-25 05:48Incorrect plots with purity=NA
- Issue#197THT-sleepy2024-04-08 13:10Can bams with marked duplicates(without removing) be used as input for snp-pileup?
- Issue#198THT-sleepy2024-04-08 13:06cf.em too low?
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 31 stars here means stars gained during the window, not the repo's star count.