Mummer alignment tool
active 2024-08-13 → 2026-04-21 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 617 days from 2024-08-13 to 2026-04-21. Pushes: 17 total, peak 5 in a day. Pull requests: 4 total, peak 3 in a day. Issues: 13 total, peak 2 in a day. Comments: 21 total, peak 3 in a day. Stars: 55 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| gmarcais | 26 | 17 | 4 | 4 |
| Jnhcau | 5 | 0 | 0 | 5 |
| yurivict | 4 | 0 | 0 | 0 |
| HamiltonG | 3 | 0 | 0 | 1 |
| ghbore | 2 | 0 | 0 | 0 |
| wenkaiyan-kevin | 2 | 0 | 0 | 2 |
| casusr | 2 | 0 | 0 | 2 |
| Victoria-pda | 1 | 0 | 0 | 1 |
| UriNeri | 1 | 0 | 0 | 1 |
| jawad9-11 | 1 | 0 | 0 | 0 |
| DayTimeMouse | 1 | 0 | 0 | 1 |
| studies-related | 1 | 0 | 0 | 0 |
| Prunoideae | 1 | 0 | 0 | 1 |
| ayoraind | 1 | 0 | 0 | 1 |
| splaisan | 1 | 0 | 0 | 1 |
| gyhsstql | 1 | 0 | 0 | 1 |
| Lukecell | 1 | 0 | 0 | 0 |
| gnxsf | 1 | 0 | 0 | 1 |
| kloetzl | 1 | 0 | 0 | 1 |
| yongjiam | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#95gnxsf2026-01-20 15:41dnadiff takes forever for certain genomes
- Issue comment#229Jnhcau2025-11-04 04:51nucmer to identify large insertion/PAV for building linear pangenome
- Issue comment#198Jnhcau2025-11-02 04:52delta-filter no error and no results
- Issue comment#198Jnhcau2025-09-21 14:55delta-filter no error and no results
- Issue#233Lukecell2025-09-14 23:23Promer gives error when run
- Issue#232jawad9-112025-09-10 07:38Information regarding about the Tandem repeats
- Issue comment#127splaisan2025-09-08 05:40speedup 'delta-filter' on very large nucmer delta inputs
- Issue comment#198Victoria-pda2025-09-08 02:57delta-filter no error and no results
- Issue comment#55ayoraind2025-08-12 14:23Promer error
- Issue#231ying06242025-08-04 04:36mgaps
- Issue comment#198Jnhcau2025-07-28 02:01delta-filter no error and no results
- Issue comment#198wenkaiyan-kevin2025-07-28 01:57delta-filter no error and no results
- Issue comment#30kloetzl2025-07-17 19:34Postnuc speed
- Issue#230studies-related2025-07-11 10:01Different results when aligning multiple query sequences together vs. separately
- Issue#229yongjiam2025-07-04 14:28nucmer to identify large insertion/PAV for building linear pangenome
- Issue#227HamiltonG2025-06-02 04:30Unable to build mummer from apptainer def
- Issue comment#227HamiltonG2025-06-02 04:30Unable to build mummer from apptainer def
- Issue#227HamiltonG2025-05-30 09:04Unable to build apptainer container
- Issue#225ghbore2025-05-16 23:01Issue with MUMmer (Version 4.0.1) Result Reproducibility
- Issue comment#161casusr2025-03-28 01:58mummerplot report error "integer overflow; change to floating point"
- Issue comment#161casusr2025-03-28 01:56mummerplot report error "integer overflow; change to floating point"
- Issue#225ghbore2025-03-05 04:54Issue with MUMmer (Version 4.0.1) Result Reproducibility
- Issue#224yurivict2025-02-08 05:446 tests fail
- Issue comment#221gmarcais2025-02-03 00:35Tests fai to compile: error: no matching constructor for initialization of 'param_type', etc
- Pull request#222gmarcais2025-02-03 00:33
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 55 stars here means stars gained during the window, not the repo's star count.