A bioinformatics tool for working with modified bases
active 2023-08-15 → 2026-08-11 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 1093 days from 2023-08-15 to 2026-08-11. Pushes: 67 total, peak 5 in a day. Pull requests: 11 total, peak 1 in a day. Issues: 716 total, peak 10 in a day. Comments: 1,862 total, peak 21 in a day. Stars: 171 total, peak 4 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| ArtRand | 1.2K | 66 | 1 | 938 |
| Ge0rges | 170 | 0 | 0 | 96 |
| SuhasSrinivasan | 44 | 0 | 4 | 30 |
| baibhav-bioinfo | 34 | 0 | 0 | 26 |
| billytcl | 30 | 0 | 0 | 17 |
| marcus1487 | 28 | 0 | 0 | 28 |
| hannan666666 | 26 | 0 | 0 | 16 |
| Macdot3 | 25 | 0 | 0 | 20 |
| Yang990-sys | 25 | 0 | 0 | 13 |
| KunFang93 | 23 | 0 | 0 | 13 |
| weishwu | 22 | 0 | 0 | 11 |
| mattloose | 21 | 0 | 0 | 14 |
| Tang-pro | 18 | 0 | 0 | 11 |
| ArnavBharti | 18 | 0 | 0 | 11 |
| OceaneMion | 18 | 0 | 0 | 11 |
| kamaloxfordpathology | 16 | 0 | 0 | 7 |
| Proy321 | 15 | 0 | 0 | 13 |
| PanZiwei | 15 | 0 | 0 | 7 |
| kylepalos | 15 | 0 | 0 | 6 |
| faulk-lab | 15 | 0 | 0 | 12 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#649SuhasSrinivasan2026-08-11 01:34summary --cpg includes unmapped modification calls
- Issue#633ArtRand2026-06-05 23:27compare-tx-sites multiple replicates per condition
- Issue#633ArtRand2026-06-05 23:27compare-tx-sites multiple replicates per condition
- Issue#632ArtRand2026-06-05 00:18`dmr compare-tx-sites`: unmodified counts are overwritten (not summed) across isoforms at shared genomic positions
- Issue comment#615ArtRand2026-05-29 23:50Feat/support reference group for modkit dmr multi
- Issue#618eltonjrv2026-05-08 10:51pileUp and dmr showing significant results for m6A even with very low amount of mapped reads from Dorado's modBAM
- Issue#614SuhasSrinivasan2026-05-04 03:24v0.6.2 tag contains Cargo.toml with version 0.6.1 — binary self-reports wrong version
- Issue#594sklages2026-05-02 03:03modkit pileup for supplementary alignments?
- Issue comment#612casmerifle2026-04-28 05:06V0.6.1 does not work on pacbio samples, while v0.5.0 worked fine (no problems with ONT)
- Issue#609aadali2026-04-10 05:34pileup CLI parse failure
- Issue comment#606gsukrit2026-04-08 07:39Discrepancy in calls when running individual modified base pileup and combined modbase pileup
- Issue comment#606ArtRand2026-04-08 03:33Discrepancy in calls when running individual modified base pileup and combined modbase pileup
- Issue#604ArtRand2026-04-08 03:27Invalid data for modkit dmr pair
- Issue#603ArtRand2026-04-08 03:25Question about DMR pair results
- Issue comment#601ArtRand2026-03-23 22:45Add a script to compile modkit with libtorch GPU support
- Pull request#601SuhasSrinivasan2026-03-23 03:58
- Issue comment#598SuhasSrinivasan2026-03-20 04:06modkit pileup does not use all cores on Apple Silicon and prefers E-cores
- Issue comment#598SuhasSrinivasan2026-03-20 00:15modkit pileup does not use all cores on Apple Silicon and prefers E-cores
- Issue comment#595decibel-tom2026-03-19 18:49Modkit pileup --modified-bases 5mC and 5hmC returning same results
- Issue comment#591khushimamgain2026-03-18 14:57modkit dmr results- question
- Issue comment#590zine-el-aabidine2026-03-13 07:51Question about DMR pair results
- Pull request#569SuhasSrinivasan2026-03-12 22:46
- Issue comment#573SuhasSrinivasan2026-03-12 22:45Add chromatin stenciling image with white background instead of transparent
- Issue comment#572SuhasSrinivasan2026-03-12 22:28Black lines and black text are not visible in Open Chromatin Illustration
- Issue comment#589ArtRand2026-03-09 23:22How to extract one modification at a time- used to use --call-code parameter?
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 171 stars here means stars gained during the window, not the repo's star count.