Toolkit for single-cell copy number analysis
active 2024-02-11 → 2026-02-12 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 733 days from 2024-02-11 to 2026-02-12. Pushes: 2 total, peak 1 in a day. Pull requests: 1 total, peak 1 in a day. Issues: 9 total, peak 3 in a day. Comments: 12 total, peak 2 in a day. Stars: 6 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| darlanminussi | 15 | 0 | 0 | 9 |
| Kris69w | 3 | 2 | 1 | 0 |
| SenLiBio | 2 | 0 | 0 | 1 |
| Xiangjun99 | 2 | 0 | 0 | 2 |
| Urja25 | 1 | 0 | 0 | 0 |
| monicaSudarsanam | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue#108darlanminussi2025-09-26 17:52Why use runUMAP instead of runPCA to identify subclones?
- Issue comment#109darlanminussi2025-09-26 17:52hg19 runvar bin bug for 1Mb
- Issue#108Urja252025-09-17 14:48Why use runUMAP instead of runPCA to identify subclones?
- Pull request#107Kris69w2025-07-11 21:23
- Issue comment#101Xiangjun992025-03-20 01:43Issue with creating CopyKit object with external data
- Issue comment#101Xiangjun992025-03-19 01:19Issue with creating CopyKit object with external data
- Issue comment#101darlanminussi2025-03-16 15:49Issue with creating CopyKit object with external data
- Issue comment#106SenLiBio2025-03-15 12:17Issue with "BiocParallel Errors" in Copykit
- Issue#106SenLiBio2025-03-15 12:17Issue with "BiocParallel Errors" in Copykit
- Issue comment#106darlanminussi2025-03-11 04:43Issue with "BiocParallel Errors" in Copykit
- Issue#56darlanminussi2025-01-18 17:40Automated detection of segments of interest
- Issue comment#101darlanminussi2025-01-18 17:31Issue with creating CopyKit object with external data
- Issue#105darlanminussi2025-01-18 17:16Error in scQuantum
- Issue comment#104darlanminussi2025-01-18 17:14calcInteger error
- Issue#89darlanminussi2024-11-04 01:42export IGV seg ratio file
- Issue#24darlanminussi2024-11-04 01:42Make metadata more accessible in cell ratioplots
- Issue comment#101darlanminussi2024-11-04 01:41Issue with creating CopyKit object with external data
- Issue comment#103darlanminussi2024-11-04 01:41Does copykit account for the baseline copy number differences on the chrX and Y between male and female samples?
- Issue#103darlanminussi2024-11-04 01:41Does copykit account for the baseline copy number differences on the chrX and Y between male and female samples?
- Issue comment#102darlanminussi2024-10-23 05:05plotGeneCopy with logr does not work
- Issue#102monicaSudarsanam2024-10-17 10:32plotGeneCopy with logr does not work
- Issue comment#101darlanminussi2024-10-17 00:10Issue with creating CopyKit object with external data
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 6 stars here means stars gained during the window, not the repo's star count.