NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.
Jupyter Notebook · active 2023-08-17 → 2026-06-29 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 1048 days from 2023-08-17 to 2026-06-29. Pushes: 104 total, peak 7 in a day. Pull requests: 140 total, peak 3 in a day. Issues: 369 total, peak 12 in a day. Comments: 599 total, peak 11 in a day. Stars: 257 total, peak 4 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| ericcox1 | 333 | 15 | 0 | 204 |
| BradHolmes | 217 | 79 | 133 | 3 |
| olearyna | 113 | 0 | 0 | 86 |
| corneliusroemer | 58 | 0 | 1 | 33 |
| syntheticgio | 55 | 0 | 0 | 37 |
| manulera | 29 | 0 | 0 | 15 |
| mtntsuchiya | 25 | 9 | 0 | 11 |
| muffato | 15 | 0 | 0 | 9 |
| joverlee521 | 13 | 0 | 0 | 6 |
| anna-parker | 12 | 0 | 0 | 5 |
| AngieHinrichs | 11 | 0 | 0 | 8 |
| conchoecia | 10 | 0 | 0 | 5 |
| fgvieira | 9 | 0 | 0 | 5 |
| MauriAndresMU1313 | 8 | 0 | 0 | 4 |
| somayeh82 | 8 | 0 | 0 | 4 |
| dtdoering | 7 | 0 | 0 | 5 |
| jvolkening | 7 | 0 | 0 | 4 |
| aboffin | 7 | 0 | 0 | 4 |
| kapsakcj | 7 | 0 | 0 | 6 |
| theosanderson | 7 | 0 | 0 | 7 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#589ericcox12026-06-25 23:18Searching for `Wikstroemia sandwicensis` does not return the expected taxonomy
- Issue comment#576jo-delia-faraguna2026-05-06 23:12--assembly-version does not filter on assembly status
- Issue#575katherinermartin2026-05-02 21:18INTERNAL_ERROR; received from peer using datasets download genome accession
- Issue#575katherinermartin2026-05-02 21:18INTERNAL_ERROR; received from peer using datasets download genome accession
- Issue comment#183mtntsuchiya2026-04-06 15:03Downloading large datasets fail and start over
- Issue comment#183mtntsuchiya2026-03-24 19:16Downloading large datasets fail and start over
- ReleaseBradHolmes2026-03-03 19:45v18.19.0
- ReleaseBradHolmes2026-02-20 14:06v18.18.0
- Pull request#561chase-cog-ai2026-02-11 01:12
- Pull request#560BradHolmes2026-02-04 18:34
- Issue#531ericcox12026-02-02 16:46Notice
- Issue comment#555tseemann2026-01-31 05:43Is 44,600 bacertial genomes too much for ownload genome accession ?
- Issue comment#558mcn31592026-01-28 17:19WP identifier doesn't work with `datasets summary gene accession`
- Issue#558ericcox12026-01-28 14:33WP identifier doesn't work with `datasets summary gene accession`
- Issue comment#554ezherman2026-01-21 15:08Unavailable file causes rehyrdation failure
- Issue#555ericcox12026-01-20 17:40Is 44,600 bacertial genomes too much for ownload genome accession ?
- Issue comment#552tseemann2026-01-15 07:29Incomplete ZIP downloads are still kept
- Issue#551ericcox12026-01-14 17:10Downloaded proteins are just called 'proteins.faa' - no accession?
- Issue comment#551ericcox12026-01-14 17:10Downloaded proteins are just called 'proteins.faa' - no accession?
- Issue#554ezherman2026-01-14 15:03Unavailable file causes rehyrdation failure
- Issue#554ezherman2026-01-14 15:03Unavailable file causes rehyrdation failure
- Issue#552tseemann2026-01-14 03:44Incomplete ZIP downloads are still kept
- Pull request#550BradHolmes2026-01-05 14:17
- Issue#549nekrut2025-12-18 22:19Using `--reference` flag with taxon queries produces a confusing error message about BioProject accessions.
- Pull request#548BradHolmes2025-12-12 16:24
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 257 stars here means stars gained during the window, not the repo's star count.