Foreign Contamination Screening caller scripts and documentation
active 2023-08-28 → 2026-04-11 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 958 days from 2023-08-28 to 2026-04-11. Pushes: 9 total, peak 2 in a day. Pull requests: 3 total, peak 2 in a day. Issues: 109 total, peak 8 in a day. Comments: 222 total, peak 10 in a day. Stars: 90 total, peak 3 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| etvedte | 167 | 8 | 2 | 115 |
| eeaunin | 18 | 0 | 0 | 11 |
| pstrope | 12 | 1 | 0 | 9 |
| Artifice120 | 9 | 0 | 0 | 7 |
| fgvieira | 9 | 0 | 0 | 5 |
| maruiqi0710 | 8 | 0 | 0 | 4 |
| zhaoxuetong | 7 | 0 | 0 | 3 |
| LaurenHuet | 7 | 0 | 0 | 7 |
| dmacguigan | 6 | 0 | 0 | 5 |
| bndaniel | 6 | 0 | 0 | 5 |
| ptrebert | 6 | 0 | 0 | 4 |
| Macrobrachium | 5 | 0 | 0 | 4 |
| ShenMJ99 | 5 | 0 | 0 | 2 |
| RNieuwenhuis | 4 | 0 | 0 | 3 |
| hxtjc | 4 | 0 | 0 | 3 |
| ckeeling | 4 | 0 | 0 | 1 |
| carolindahms | 3 | 0 | 0 | 1 |
| Catherine9826 | 3 | 0 | 0 | 1 |
| mneitzey | 3 | 0 | 0 | 1 |
| LiaOb21 | 3 | 0 | 0 | 2 |
Recent activity
Latest issues, pull requests and releases
- Issue#124etvedte2026-02-02 16:34February 2, 2026 Notice
- Issue comment#122maruiqi07102026-01-14 16:23How to treat same-kingdom chimeric sequences, transposons, repeats, low-coverage sequences, and inconclusive results as contaminants
- Issue comment#122murphyte2026-01-14 15:58How to treat same-kingdom chimeric sequences, transposons, repeats, low-coverage sequences, and inconclusive results as contaminants
- Issue comment#122murphyte2026-01-14 15:25How to treat same-kingdom chimeric sequences, transposons, repeats, low-coverage sequences, and inconclusive results as contaminants
- Issue comment#121etvedte2025-12-02 13:28IO load?
- Issue#120ManuelArcieri2025-11-25 18:50[FEATURE REQUEST]: Updated database version
- Issue#116etvedte2025-11-25 18:14docker error
- Issue#120ManuelArcieri2025-10-07 16:13[FEATURE REQUEST]: Updated database version
- Issue#119etvedte2025-10-01 16:11Oct 1, 2025 Notice
- Issue comment#118pstrope2025-09-25 18:43"clean" function unmasks the genome?
- Issue comment#91DLBPointon2025-09-17 11:39[FEATURE REQUEST]: clean up temp when finishes
- Issue comment#117etvedte2025-09-03 12:22[FEATURE REQUEST]: <title>Question: How to reduce FCS-GX memory usage (~300GB)?
- Issue comment#115etvedte2025-08-29 14:52[FEATURE REQUEST]: <title>Monitoring contamination of eukaryotic or prokaryotic sequences?
- Issue comment#115etvedte2025-08-29 12:32[FEATURE REQUEST]: <title>Monitoring contamination of eukaryotic or prokaryotic sequences?
- Issue comment#115zhaoxuetong2025-08-29 09:35[FEATURE REQUEST]: <title>Monitoring contamination of eukaryotic or prokaryotic sequences?
- Issue comment#116etvedte2025-08-28 15:56docker error
- Issue#54etvedte2025-08-28 13:46Which manufacturers' sequencing adapters are included in the reference database of FCS-adaptor?
- Issue#107etvedte2025-08-28 13:43Reported region too small and false positives
- Issue#114etvedte2025-08-28 13:37Could FCS-GX be used for removing contamination in transcriptomes?
- Issue#115zhaoxuetong2025-08-28 07:36[FEATURE REQUEST]: <title>Monitoring contamination of eukaryotic or prokaryotic sequences?
- Issue#114jefferalexdurfue2025-07-19 23:24Could FCS-GX be used for removing contamination in transcriptomes?
- Issue#113ckeeling2025-07-14 14:47[FEATURE REQUEST]: FCS-GX: need for iteration not emphasized enough in WIKI - automatic iteration needed?
- Issue#112drdna2025-06-04 14:00clean genome does not work
- Issue comment#104maruiqi07102025-05-16 06:23[BUG]: An error while running fcs_gx clean genome on the FCS adapter result report (fcs_adaptor_report.txt)
- Issue comment#111etvedte2025-05-12 16:25[BUG]: FCS adaptor container no longer contains bash,
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 90 stars here means stars gained during the window, not the repo's star count.