NCBI Prokaryotic Genome Annotation Pipeline
active 2023-08-15 → 2026-06-01 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 1022 days from 2023-08-15 to 2026-06-01. Pushes: 132 total, peak 6 in a day. Pull requests: 7 total, peak 2 in a day. Issues: 161 total, peak 19 in a day. Comments: 497 total, peak 28 in a day. Stars: 112 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| azat-badretdin | 405 | 95 | 3 | 261 |
| george-coulouris | 72 | 14 | 1 | 24 |
| ericjove | 25 | 22 | 0 | 3 |
| raysully | 20 | 0 | 0 | 18 |
| Sabarish2001 | 15 | 0 | 0 | 14 |
| dlhuseby29 | 14 | 0 | 0 | 13 |
| Chahrazadt87 | 12 | 0 | 0 | 11 |
| yulinpengcool | 12 | 0 | 0 | 11 |
| MrTomRod | 12 | 0 | 0 | 6 |
| sekhwal | 11 | 0 | 0 | 9 |
| cvond | 10 | 0 | 0 | 10 |
| asd1864714 | 8 | 0 | 0 | 7 |
| AnmotCar | 8 | 0 | 0 | 6 |
| kfsb | 7 | 0 | 0 | 6 |
| vappiah | 7 | 0 | 0 | 7 |
| thibaudnis | 6 | 0 | 0 | 6 |
| TCHeaven | 5 | 0 | 0 | 3 |
| kevinmyers | 5 | 0 | 0 | 4 |
| snackens | 5 | 0 | 0 | 3 |
| juansebe1 | 5 | 0 | 0 | 4 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#357george-coulouris2026-05-23 20:18[BUG] pgap.py fails on macOS because bind point is created as directory
- Issue comment#358george-coulouris2026-05-23 20:17use touch to create docker bind points as files
- Issue comment#356azat-badretdin2025-11-28 14:57What parameters does PGAP uses internally for hmmsearch ?
- Issue comment#353Siupek2025-11-04 07:00PGAP job failed
- Issue comment#355samfux842025-10-08 06:13[BUG] ./pgap.py --update fails with permission denied error
- Issue#354TriLab-bioinf2025-09-25 18:10[BUG] <title>PGAP failed, docker exited with rc = 255
- Issue#354TriLab-bioinf2025-09-25 18:09[BUG] <title>PGAP failed, docker exited with rc = 255
- Issue#352george-coulouris2025-08-28 19:56[BUG] Issue when specifying --cpus
- Issue comment#353ayeshaahsan214-creator2025-08-26 10:46PGAP job failed
- Issue comment#353azat-badretdin2025-08-26 10:44PGAP job failed
- Issue comment#353ayeshaahsan214-creator2025-08-26 06:29PGAP job failed
- Issue#349azat-badretdin2025-08-25 14:44PGAP SIGSEGV crash when using genus-level taxon; how to handle inconclusive species-level taxon-check results?
- Issue#351george-coulouris2025-08-18 18:59Changes in pgap.py
- Issue#350george-coulouris2025-08-18 16:35Some inputs does not produce annotation outputs
- Issue#350george-coulouris2025-08-18 16:34Some inputs does not produce annotation outputs
- Issue comment#352azat-badretdin2025-08-18 11:52[BUG] Issue when specifying --cpus
- Issue comment#350azat-badretdin2025-08-18 09:23Some inputs does not produce annotation outputs
- Issue comment#351george-coulouris2025-08-13 18:47Changes in pgap.py
- Issue#351DerWiener2025-08-12 11:11Changes in pgap.py
- Issue comment#350JanaMus2025-08-06 06:52Some inputs does not produce annotation outputs
- Issue comment#350azat-badretdin2025-08-04 15:40Some inputs does not produce annotation outputs
- Issue comment#349george-coulouris2025-08-04 14:41PGAP SIGSEGV crash when using genus-level taxon; how to handle inconclusive species-level taxon-check results?
- Issue comment#350azat-badretdin2025-08-04 11:12Some inputs does not produce annotation outputs
- Issue comment#348george-coulouris2025-07-18 13:58[BUG] GFF format may be not official
- Issue#348george-coulouris2025-07-18 13:58[BUG] GFF format may be not official
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 112 stars here means stars gained during the window, not the repo's star count.