Eukaryotic Genome Annotation Pipeline
active 2024-12-10 → 2026-08-11 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 610 days from 2024-12-10 to 2026-08-11. Pushes: 77 total, peak 8 in a day. Pull requests: 11 total, peak 4 in a day. Issues: 42 total, peak 4 in a day. Comments: 83 total, peak 8 in a day. Stars: 23 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| hyphaltip | 125 | 69 | 7 | 35 |
| Copilot | 26 | 8 | 4 | 11 |
| nextgenusfs | 8 | 0 | 0 | 7 |
| DaRinker | 5 | 0 | 0 | 3 |
| JWDebler | 5 | 0 | 0 | 4 |
| CaroZ655 | 4 | 0 | 0 | 1 |
| Middle-Author-Bioinformatics | 3 | 0 | 0 | 1 |
| Alteroldis | 3 | 0 | 0 | 1 |
| breemims | 2 | 0 | 0 | 2 |
| NitinMandloi | 2 | 0 | 0 | 1 |
| edwhisnant | 2 | 0 | 0 | 2 |
| drdna | 2 | 0 | 0 | 1 |
| jallen73 | 2 | 0 | 0 | 0 |
| sschrstn | 2 | 0 | 0 | 0 |
| lalalagartija | 1 | 0 | 0 | 0 |
| tayabsoomro | 1 | 0 | 0 | 1 |
| keroguynes | 1 | 0 | 0 | 0 |
| Jack-Gregory-Bioinformatics | 1 | 0 | 0 | 1 |
| agesantos | 1 | 0 | 0 | 0 |
| ds-gene104 | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Pull request#1194Copilot2026-08-07 16:54
- Pull request#1170hyphaltip2026-06-12 23:43
- Pull request#1170hyphaltip2026-06-07 01:47
- Issue#1169hyphaltip2026-06-07 01:46augustus hangs in BUSCO runs for training
- Issue#1169hyphaltip2026-06-07 01:46augustus hangs in BUSCO runs for training
- Issue#1169hyphaltip2026-06-07 01:46augustus hangs in BUSCO runs for training
- Issue#1160hyphaltip2026-06-07 01:39Funannotate replaces all occurrences of 'gene' with 'protein' in gene names.
- Pull request#1168hyphaltip2026-06-07 01:37
- Issue comment#1160hyphaltip2026-05-15 17:57Funannotate replaces all occurrences of 'gene' with 'protein' in gene names.
- Issue comment#1158hyphaltip2026-05-10 22:31Add translationtable support
- Pull request#1158hyphaltip2026-05-10 22:30
- Issue comment#1154hyphaltip2026-04-08 05:34CMD ERROR: gmes_petap.pl
- Pull request#1157hyphaltip2026-04-08 05:28
- Pull request#1157hyphaltip2026-04-08 05:19
- Issue#1155CaroZ6552026-04-03 13:56Results of Interproscan, Eggnog, Phobius and Antismash in Funannotate annotation
- Issue comment#1154hyphaltip2026-03-19 22:38CMD ERROR: gmes_petap.pl
- Issue comment#1149hyphaltip2026-02-09 23:17SafeRemove trainingdir
- Issue comment#1133hyphaltip2026-02-09 23:14What's the -T1, T2, T3, T4, T5 in the GBK file means after the funannotate update command?
- Issue#1103hyphaltip2026-02-09 23:12Separate funannotate update in 3 steps
- Issue comment#1103hyphaltip2026-02-09 23:12Separate funannotate update in 3 steps
- Issue comment#1108hyphaltip2026-02-09 23:09funannotate annotate fails at the BUSCO annotation step
- Issue comment#1106hyphaltip2026-02-09 23:08funannotate iprscan local producing empty XML file
- Issue comment#1094hyphaltip2026-02-09 23:06Automatic cleanup of tar.gz files after setup
- Issue comment#1151hyphaltip2026-02-09 23:05Query Regtarding Funannotate/MySQL
- Issue comment#1148rzelle-lallemand2026-01-21 05:13dbCAN error while download or validate
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 23 stars here means stars gained during the window, not the repo's star count.