The Nextstrain command-line interface (CLI)—a program called nextstrain—which aims to provide a consistent way to run and visualize pathogen builds and access Nextstrain components like Augur and Auspice across computing environments such as Docker, Conda, and AWS Batch.
active 2024-10-17 → 2026-08-07 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 660 days from 2024-10-17 to 2026-08-07. Pushes: 120 total, peak 6 in a day. Pull requests: 57 total, peak 5 in a day. Issues: 27 total, peak 2 in a day. Comments: 156 total, peak 11 in a day. Stars: 0 total, peak 0 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| tsibley | 147 | 51 | 14 | 54 |
| victorlin | 139 | 42 | 24 | 43 |
| joverlee521 | 82 | 13 | 4 | 30 |
| jameshadfield | 16 | 0 | 0 | 8 |
| genehack | 14 | 4 | 1 | 5 |
| dependabot[bot] | 11 | 0 | 11 | 0 |
| jgallowa07 | 1 | 0 | 0 | 1 |
| corneliusroemer | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Pull request#499victorlin2026-03-27 00:00
- Pull request#514victorlin2026-03-20 23:53
- Pull request#514victorlin2026-03-20 23:53
- Pull request#512dependabot[bot]2026-03-04 00:25
- Pull request#499victorlin2026-02-11 00:04
- Issue#507victorlin2026-02-10 18:15CI: No module named 'pkg_resources'
- Issue comment#507victorlin2026-02-10 01:22CI: No module named 'pkg_resources'
- Pull request#508victorlin2026-02-10 01:15
- Pull request#508victorlin2026-02-10 01:15
- Issue comment#505victorlin2026-02-04 19:02Add docs for `nextstrain-pathogen.yaml` file
- Issue#505joverlee5212026-02-04 18:42Add docs for `nextstrain-pathogen.yaml` file
- Issue comment#503victorlin2026-02-03 21:53Add option to list run-compatible pathogen repos
- Pull request#501victorlin2026-01-30 20:40
- Issue comment#496victorlin2026-01-06 00:47Revisit fsspec/boto3 dependency declarations
- Pull request#499victorlin2025-12-31 01:18
- Pull request#499victorlin2025-12-31 01:18
- Pull request#497dependabot[bot]2025-12-15 23:06
- Pull request#498dependabot[bot]2025-12-15 22:21
- Pull request#498dependabot[bot]2025-12-15 19:08
- Pull request#497dependabot[bot]2025-12-15 19:08
- Pull request#497dependabot[bot]2025-12-15 19:08
- Issue#496victorlin2025-12-09 20:36Revisit fsspec/boto3 dependency declarations
- Issue comment#493victorlin2025-12-09 19:09CI: No module named 'boto3'
- Issue comment#493victorlin2025-12-08 18:28CI: No module named 'boto3'
- Issue comment#492victorlin2025-12-06 00:29Use macOS 15 Intel runner
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 0 stars here means stars gained during the window, not the repo's star count.