Data and scripts for Zika virus tutorial
active 2023-08-18 → 2026-07-14 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 1062 days from 2023-08-18 to 2026-07-14. Pushes: 7 total, peak 1 in a day. Pull requests: 8 total, peak 1 in a day. Issues: 4 total, peak 1 in a day. Comments: 17 total, peak 5 in a day. Stars: 3 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| genehack | 11 | 2 | 3 | 4 |
| joverlee521 | 8 | 2 | 1 | 3 |
| tsibley | 7 | 0 | 0 | 7 |
| huddlej | 5 | 3 | 2 | 0 |
| victorlin | 3 | 0 | 0 | 1 |
| jameshadfield | 3 | 0 | 1 | 2 |
| j23414 | 2 | 0 | 0 | 0 |
| corneliusroemer | 1 | 0 | 1 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#19joverlee5212025-09-26 22:27Add `nextstrain run` support
- Issue comment#19tsibley2025-09-26 22:15Add `nextstrain run` support
- Issue comment#19tsibley2025-09-26 22:13Add `nextstrain run` support
- Pull request#19joverlee5212025-09-26 21:41
- Issue#18joverlee5212025-09-26 17:07Add support for `nextstrain run`
- Issue comment#17joverlee5212025-07-03 23:42Update workflows to be compatible with Snakemake v9
- Issue#17joverlee5212025-07-03 21:56Update workflows to be compatible with Snakemake v9
- Pull request#12genehack2024-12-03 23:42
- Issue comment#12tsibley2024-12-03 22:10Add prM protein, remove PRO (pr) protein
- Issue comment#13tsibley2024-11-22 20:35Add default profile to set Snakemake CLI args
- Issue comment#14genehack2024-11-22 20:18Rename `master` to `main`
- Issue#14genehack2024-11-22 20:18Rename `master` to `main`
- Issue comment#11genehack2024-11-22 20:13Generalize template repository to work with (most) viral pathogens
- Pull request#11genehack2024-11-22 20:13
- Issue comment#12genehack2024-11-22 20:11Add prM protein, remove PRO (pr) protein
- Issue comment#13genehack2024-11-22 20:07Add default profile to set Snakemake CLI args
- Pull request#16huddlej2024-11-04 17:23
- Pull request#16huddlej2024-10-31 18:38
- Pull request#15genehack2024-07-17 18:31
- Issue#14genehack2024-06-10 23:40Rename `master` to `main`
- Issue comment#13joverlee5212023-09-15 17:58Add default profile to set Snakemake CLI args
- Pull request#13corneliusroemer2023-09-15 09:23
- Issue comment#12tsibley2023-08-31 23:40Add prM protein, remove PRO (pr) protein
- Issue comment#12jameshadfield2023-08-31 23:30Add prM protein, remove PRO (pr) protein
- Issue comment#12tsibley2023-08-31 23:10Add prM protein, remove PRO (pr) protein
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 3 stars here means stars gained during the window, not the repo's star count.