Preprocessing workflow for sequencing data at CMGG
active 2024-02-27 → 2026-07-15 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 870 days from 2024-02-27 to 2026-07-15. Pushes: 335 total, peak 14 in a day. Pull requests: 90 total, peak 8 in a day. Issues: 27 total, peak 4 in a day. Comments: 82 total, peak 10 in a day. Stars: 5 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| matthdsm | 442 | 287 | 71 | 37 |
| nvnieuwk | 164 | 47 | 18 | 39 |
| Hwanseok-Jeong | 5 | 0 | 1 | 2 |
| ToonRosseel | 4 | 0 | 0 | 2 |
| tomiles | 2 | 0 | 0 | 1 |
| mvheetve | 2 | 0 | 0 | 0 |
| daraujop | 2 | 0 | 0 | 1 |
| Copilot | 2 | 0 | 0 | 0 |
| freerkvandijk | 2 | 2 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Pull request#163nvnieuwk2026-03-13 09:52
- Releasematthdsm2026-03-06 12:083.0.0 - Icebound Insect
- Issue comment#157matthdsm2026-02-19 11:54Migrate pipeline to topic only
- Pull request#155matthdsm2026-02-13 06:33
- Pull request#153matthdsm2026-02-06 16:20
- Issue comment#153matthdsm2026-02-06 12:41gcp config: add instance templates
- Pull request#150nvnieuwk2025-12-17 12:35
- Pull request#148matthdsm2025-12-09 11:48
- Issue comment#145matthdsm2025-12-09 11:15InterOp QC for Illumina runs
- Pull request#148matthdsm2025-12-08 21:29
- Issue#147matthdsm2025-12-05 07:53Find replacements for Picard
- Pull request#146matthdsm2025-12-04 20:26
- Issue comment#125matthdsm2025-12-04 19:59output data per `library` where possible
- Issue comment#143matthdsm2025-12-04 19:58output files in library subdir where possible
- Issue#145matthdsm2025-12-04 19:41InterOp QC for Illumina runs
- Issue#145matthdsm2025-12-04 19:41InterOp QC for Illumina runs
- Issue#144matthdsm2025-12-04 19:38Borrow from nf-core/seqinspector
- Issue#144matthdsm2025-12-04 19:38Borrow from nf-core/seqinspector
- Issue#141matthdsm2025-12-02 09:25Find a way to derive the flowcell type from a bcl input and set the resource requirements accordingly
- Issue#125matthdsm2025-11-19 11:50output data per `library` where possible
- Issue comment#138nvnieuwk2025-11-12 13:37Workflow output definitions
- Pull request#138nvnieuwk2025-11-04 14:09
- Issue comment#136matthdsm2025-09-11 18:12only use first versions of modules
- Pull request#136nvnieuwk2025-09-05 14:31
- Issue comment#134Hwanseok-Jeong2025-08-20 09:48Adding UMI consensus flow to the pipeline
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 5 stars here means stars gained during the window, not the repo's star count.