pipeline with aligner(s), qc, genome cov (bigWig) and enrich regions caller
active 2023-08-15 → 2026-07-25 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 1076 days from 2023-08-15 to 2026-07-25. Pushes: 62 total, peak 8 in a day. Pull requests: 88 total, peak 5 in a day. Issues: 73 total, peak 6 in a day. Comments: 158 total, peak 15 in a day. Stars: 67 total, peak 7 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| JoseEspinosa | 163 | 22 | 39 | 61 |
| nf-core-bot | 52 | 15 | 27 | 10 |
| lpantano | 33 | 19 | 7 | 5 |
| github-actions[bot] | 28 | 0 | 0 | 28 |
| bjlang | 25 | 2 | 6 | 8 |
| maxulysse | 15 | 1 | 1 | 3 |
| SuhasSrinivasan | 10 | 0 | 0 | 4 |
| mashehu | 9 | 1 | 1 | 1 |
| mirpedrol | 8 | 0 | 0 | 3 |
| lindenb | 7 | 1 | 0 | 3 |
| SPPearce | 4 | 0 | 0 | 3 |
| apeltzer | 4 | 0 | 0 | 3 |
| siddharthab | 4 | 0 | 2 | 1 |
| CarsonJM | 3 | 0 | 0 | 1 |
| FerrenaAlexander | 3 | 0 | 0 | 1 |
| Freeda2023 | 3 | 0 | 0 | 3 |
| arugula2388 | 3 | 0 | 0 | 1 |
| edmundmiller | 3 | 0 | 0 | 1 |
| aghr | 3 | 0 | 0 | 0 |
| VErconi | 3 | 0 | 2 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#380DimitriusPramio2026-04-13 23:16ATAC-seq Spike-in control
- Issue comment#367ggrimes2026-03-12 11:52Feature Request: call peaks for each replicate (diffbind), not only the merged data
- Issue#435yxkwgp2026-02-27 03:32Docker: deprecate docker.userEmulation and use docker.runOptions; mitigates Trim Galore pipe freeze
- Issue#435yxkwgp2026-02-27 03:32Docker: deprecate docker.userEmulation and use docker.runOptions; mitigates Trim Galore pipe freeze
- Pull request#434JoseEspinosa2025-11-20 10:31
- Pull request#433nf-core-bot2025-11-20 09:31
- Pull request#432mashehu2025-11-04 21:35
- Issue#431MikeKazz2025-11-04 21:35[404] Page not found: https://nf-co.re/atacseq/output
- Issue comment#428github-actions[bot]2025-10-28 10:02Merge-template-v3.4.1
- Issue#427JoseEspinosa2025-10-24 16:31Generate complete snapshots for all tests
- Issue#427JoseEspinosa2025-10-24 13:12Generate complete snapshots for all tests
- Pull request#426nf-core-bot2025-10-16 13:38
- Issue comment#422nf-core-bot2025-07-08 11:38Important! Template update for nf-core/tools v3.3.1
- Pull request#422nf-core-bot2025-07-08 11:38
- Pull request#423nf-core-bot2025-07-08 11:38
- Pull request#422nf-core-bot2025-06-03 11:01
- Issue#421arugula23882025-05-21 13:40Error executing process
- Pull request#419JoseEspinosa2025-05-09 16:06
- Pull request#420JoseEspinosa2025-05-09 16:06
- Issue comment#420github-actions[bot]2025-05-07 14:03Merging-template-3.2.1
- Pull request#420JoseEspinosa2025-05-07 14:01
- Pull request#419nf-core-bot2025-04-30 12:25
- Issue#418BOBOL5132025-04-07 03:23several peaks correspond to the same gene
- Issue#417yabeykoon2025-04-01 08:18[404] Page not found: https://nf-co.re/atacseq/2.1.2/docs/output/
- Issue comment#377yushuen2025-03-19 07:54ERROR ~ Error executing process > 'NFCORE_ATACSEQ:ATACSEQ:FASTQ_FASTQC_UMITOOLS_TRIMGALORE:TRIMGALORE
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 67 stars here means stars gained during the window, not the repo's star count.