ChIP-seq peak-calling, QC and differential analysis pipeline.
active 2024-03-16 → 2026-07-23 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 860 days from 2024-03-16 to 2026-07-23. Pushes: 37 total, peak 5 in a day. Pull requests: 23 total, peak 3 in a day. Issues: 20 total, peak 5 in a day. Comments: 35 total, peak 6 in a day. Stars: 35 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| JoseEspinosa | 37 | 8 | 5 | 12 |
| edmundmiller | 23 | 17 | 6 | 0 |
| Kevin-Brockers | 12 | 1 | 2 | 1 |
| nf-core-bot | 11 | 5 | 4 | 2 |
| github-actions[bot] | 9 | 0 | 0 | 9 |
| bjlang | 9 | 2 | 4 | 2 |
| maxulysse | 6 | 0 | 0 | 1 |
| pinin4fjords | 6 | 3 | 0 | 0 |
| sateeshperi | 3 | 0 | 0 | 2 |
| mashehu | 2 | 0 | 0 | 0 |
| adthrasher | 2 | 0 | 0 | 0 |
| Nicobouch | 2 | 0 | 0 | 2 |
| saralinker | 1 | 0 | 0 | 1 |
| tianliu9 | 1 | 0 | 0 | 1 |
| ZeinBader | 1 | 0 | 0 | 0 |
| user-mb | 1 | 0 | 0 | 1 |
| cursor[bot] | 1 | 1 | 0 | 0 |
| nvnieuwk | 1 | 0 | 0 | 1 |
| mohammedkhalfan | 1 | 0 | 1 | 0 |
| ftamiro | 1 | 0 | 1 | 0 |
Recent activity
Latest issues, pull requests and releases
- Pull request#513Kevin-Brockers2026-05-02 21:53
- Pull request#508Kevin-Brockers2026-04-27 08:47
- Issue#506Kevin-Brockers2026-04-02 10:10Change remaining nf-core/modules and nf-core/subworkflow to handle versions topic channels
- Issue#504Kevin-Brockers2026-04-02 10:01fastq_align_chromap
- Issue#499Kevin-Brockers2026-04-02 09:57bam_markduplicates_picard
- Issue#442Kevin-Brockers2026-04-01 22:26Container hash mismatch at `NFCORE_CHIPSEQ:CHIPSEQ:PHANTOMPEAKQUALTOOLS (1)` step
- Issue comment#484Kevin-Brockers2026-04-01 22:13Update subworkflows and modules
- Issue#489Kevin-Brockers2026-04-01 22:08Change CUSTOM_GETCHROMSIZES to SAMTOOLS_FAIDX
- Issue comment#496github-actions[bot]2026-03-26 21:43Adapt local module to nf-core standard
- Issue comment#491github-actions[bot]2026-03-19 04:01Fix strict syntax errors
- Issue comment#490github-actions[bot]2026-03-17 10:23Moving KHMER_UNIQUEKMERS to subworkflow prepare_genome #416
- Issue comment#487github-actions[bot]2026-03-12 13:38Dev topic channel adaptation
- Issue#483Kevin-Brockers2026-03-11 08:34Update pipelines to use topic channels
- Issue comment#481JoseEspinosa2025-11-21 14:47Merge-template-3.5.1
- Issue comment#481github-actions[bot]2025-11-20 13:11Merge-template-3.5.1
- Pull request#480nf-core-bot2025-11-20 09:32
- Issue#479adthrasher2025-11-04 19:15Clarify documentation for `antibody`
- Issue#478adthrasher2025-11-04 19:13Clarify genome size error and update usage documentation
- Issue comment#459nvnieuwk2025-10-16 12:57Update changelog with JSON schema improvements
- Pull request#472edmundmiller2025-09-17 21:30
- Pull request#472edmundmiller2025-09-17 20:16
- Pull request#470edmundmiller2025-09-17 15:59
- Pull request#475edmundmiller2025-09-05 13:22
- Pull request#475edmundmiller2025-09-03 17:57
- Issue comment#431user-mb2025-08-29 13:10Process `NFCORE_CHIPSEQ:CHIPSEQ:FASTQ_ALIGN_BWA:BAM_SORT_STATS_SAMTOOLS:SAMTOOLS_SORT (SRR5627136_REP2_T1)` terminated with an error exit status (1)
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 35 stars here means stars gained during the window, not the repo's star count.