CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.
active 2023-08-17 → 2026-01-14 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 882 days from 2023-08-17 to 2026-01-14. Pushes: 51 total, peak 8 in a day. Pull requests: 61 total, peak 21 in a day. Issues: 49 total, peak 6 in a day. Comments: 39 total, peak 8 in a day. Stars: 9 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| CharlotteAnne | 97 | 42 | 15 | 11 |
| nf-core-bot | 29 | 6 | 16 | 7 |
| iraiosub | 14 | 0 | 4 | 4 |
| neusmf | 11 | 0 | 9 | 1 |
| github-actions[bot] | 7 | 0 | 0 | 7 |
| johannesnicolaus | 6 | 2 | 0 | 2 |
| HDash | 5 | 0 | 2 | 3 |
| SimranChhabria | 4 | 1 | 1 | 1 |
| kkuret | 4 | 0 | 0 | 0 |
| Chromojones | 4 | 0 | 3 | 0 |
| MelinaKlostermann | 3 | 0 | 1 | 1 |
| SimonDMurray | 3 | 0 | 3 | 0 |
| vecerkovakaterina | 2 | 0 | 2 | 0 |
| JDocherty67 | 2 | 0 | 2 | 0 |
| irikas | 2 | 0 | 0 | 0 |
| mohamedbahru | 2 | 0 | 0 | 0 |
| slebedeva | 2 | 0 | 0 | 1 |
| karenirawan | 1 | 0 | 1 | 0 |
| CelineLabbeCurie | 1 | 0 | 0 | 1 |
| chris-cheshire | 1 | 0 | 1 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue#173irikas2025-11-13 20:46iGenomes GRCh37 misread (?) during pureclip peakcalling
- Issue#172irikas2025-11-13 20:18No compatible iGenomes genome for iCount peakcaller
- Issue#171Chromojones2025-11-10 17:01Create new test data
- Issue#170CharlotteAnne2025-11-10 15:31we need minus bigwig with positive signal
- Issue#170CharlotteAnne2025-11-10 15:31we need minus bigwig with positive signal
- Issue#168iraiosub2025-06-12 14:41iCount summaries error
- Issue comment#167iraiosub2025-06-09 17:43feat-2-0
- Issue#167kkuret2025-05-18 15:13feat-2-0
- Issue comment#166iraiosub2025-04-09 14:24Simplified, more flexible annotation
- Issue comment#165iraiosub2025-04-09 14:14updated reference paths and UMI param names in test_full.config
- Pull request#165iraiosub2025-04-09 14:14
- Pull request#166iraiosub2025-04-09 14:13
- Issue#134iraiosub2025-04-09 12:55Replace original filtering with ensembl canonical tag
- Pull request#165iraiosub2025-04-04 16:05
- Issue#164CharlotteAnne2025-04-04 10:18Add promoter, enhancer annotations to regional summaries from genehancer for organisms where this is available
- Issue#163iraiosub2025-03-28 11:56document the annotation options and outputs
- Pull request#160CharlotteAnne2025-03-26 14:57
- Pull request#162HDash2025-03-26 14:01
- Pull request#161neusmf2025-03-26 13:52
- Issue comment#112HDash2025-03-26 13:40BAM entry point
- Issue comment#148CharlotteAnne2025-03-26 13:18Update star/align module
- Pull request#158CharlotteAnne2025-03-26 13:17
- Pull request#159CharlotteAnne2025-03-26 13:17
- Pull request#160JDocherty672025-03-26 12:06
- Pull request#159neusmf2025-03-26 09:52
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 9 stars here means stars gained during the window, not the repo's star count.