A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted next generation sequencing (NGS) data (`targeted`) as well as the discovery of important genes from knock-out or activation CRISPR-Cas9 screens using CRISPR pooled DNA (`screening`).
active 2023-08-17 → 2026-06-22 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 1041 days from 2023-08-17 to 2026-06-22. Pushes: 190 total, peak 8 in a day. Pull requests: 256 total, peak 8 in a day. Issues: 72 total, peak 5 in a day. Comments: 634 total, peak 27 in a day. Stars: 45 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| mirpedrol | 532 | 76 | 73 | 234 |
| LaurenceKuhl | 400 | 69 | 129 | 100 |
| github-actions[bot] | 121 | 0 | 0 | 121 |
| matbonfanti | 86 | 12 | 18 | 39 |
| nf-core-bot | 69 | 28 | 25 | 16 |
| mashehu | 49 | 4 | 3 | 25 |
| FriederikeHanssen | 22 | 0 | 0 | 17 |
| d4straub | 21 | 0 | 0 | 10 |
| jasmezz | 20 | 0 | 0 | 13 |
| LeonHornich | 18 | 0 | 2 | 11 |
| JoseEspinosa | 17 | 0 | 0 | 9 |
| WackerO | 13 | 0 | 0 | 5 |
| alan-tracey | 8 | 0 | 1 | 4 |
| joannakraw | 6 | 0 | 1 | 2 |
| maxulysse | 6 | 0 | 0 | 3 |
| jeremymsimon | 6 | 0 | 0 | 2 |
| npatel-ah | 5 | 0 | 0 | 4 |
| jfy133 | 4 | 0 | 1 | 1 |
| adamrtalbot | 4 | 0 | 0 | 1 |
| metinyazar | 3 | 0 | 2 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#269alvaropvr2026-02-11 16:23Lack of determinism in results across identical runs
- Issue#269alvaropvr2026-02-11 09:14Lack of determinism in results across identical runs
- Pull request#266mirpedrol2026-02-04 10:53
- Issue#254mirpedrol2026-02-03 14:50Understand above_error_rate and why it's always False for insertion
- Issue comment#263matbonfanti2025-11-20 11:04Important! Template update for nf-core/tools v3.5.1
- Issue comment#262mirpedrol2025-10-17 08:24Important! Template update for nf-core/tools v3.4.1
- Issue comment#259matbonfanti2025-10-07 10:52added new test
- Issue comment#259nf-core-bot2025-10-02 14:56added new test
- Issue#227matbonfanti2025-10-02 14:250% Alignment Rate with Bowtie2 in CRISPRseq Workflow
- Issue comment#252matbonfanti2025-10-02 14:15172 mageck is pulling conditions instead of unique sample names
- Pull request#257mirpedrol2025-09-24 09:26
- Pull request#257jfy1332025-09-23 14:32
- Issue comment#254mirpedrol2025-09-08 09:01Understand above_error_rate and why it's always False for insertion
- Issue comment#254mirpedrol2025-09-08 09:00Understand above_error_rate and why it's always False for insertion
- Issue comment#254npatel-ah2025-09-04 15:55Understand above_error_rate and why it's always False for insertion
- Issue comment#254mirpedrol2025-09-03 14:38Understand above_error_rate and why it's always False for insertion
- Issue comment#254npatel-ah2025-09-03 13:40Understand above_error_rate and why it's always False for insertion
- Issue#254npatel-ah2025-08-26 15:23Understand above_error_rate and why it's always False for insertion
- Pull request#253mirpedrol2025-07-09 08:52
- Pull request#253nf-core-bot2025-07-08 09:54
- Issue comment#250matbonfanti2025-06-27 11:44Add details for samples sheet creation
- Issue comment#252nf-core-bot2025-06-26 10:20172 mageck is pulling conditions instead of unique sample names
- Issue comment#251github-actions[bot]2025-06-26 10:16add comment about the test output saving step
- Pull request#251matbonfanti2025-06-26 10:16
- Pull request#251matbonfanti2025-06-26 10:14
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 45 stars here means stars gained during the window, not the repo's star count.