A pipeline for de novo transcriptome assembly of paired-end short reads from bulk RNA-seq
active 2024-07-08 → 2026-08-07 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 761 days from 2024-07-08 to 2026-08-07. Pushes: 87 total, peak 10 in a day. Pull requests: 74 total, peak 5 in a day. Issues: 18 total, peak 4 in a day. Comments: 89 total, peak 30 in a day. Stars: 20 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| avani-bhojwani | 164 | 69 | 55 | 22 |
| mashehu | 43 | 0 | 0 | 32 |
| nf-core-bot | 27 | 9 | 12 | 6 |
| FriederikeHanssen | 16 | 0 | 0 | 7 |
| vagkaratzas | 15 | 7 | 5 | 2 |
| fbdtemme | 9 | 0 | 0 | 5 |
| sateeshperi | 7 | 0 | 1 | 0 |
| mirpedrol | 6 | 2 | 1 | 1 |
| LilyAnderssonLee | 6 | 0 | 0 | 5 |
| IdoBar | 5 | 0 | 0 | 2 |
| ewels | 3 | 0 | 0 | 1 |
| fellen31 | 3 | 0 | 0 | 1 |
| jonasscheid | 3 | 0 | 0 | 1 |
| devjanee | 2 | 0 | 0 | 1 |
| KhoiDang410 | 2 | 0 | 0 | 0 |
| ibwoo | 2 | 0 | 0 | 2 |
| atrigila | 2 | 0 | 0 | 0 |
| charles-plessy | 2 | 0 | 0 | 0 |
| sandyjmacdonald | 1 | 0 | 0 | 0 |
| nictru | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue#52KhoiDang4102025-12-29 17:26Duplicated error with soft_filtered_transcripts is true
- Issue#52KhoiDang4102025-12-29 17:26Duplicated error with soft_filtered_transcripts is true
- Issue comment#46nf-core-bot2025-10-16 13:38Important! Template update for nf-core/tools v3.3.2
- Pull request#50nf-core-bot2025-10-16 13:38
- Pull request#47avani-bhojwani2025-08-28 08:18
- Issue comment#47avani-bhojwani2025-08-28 07:57Patch multiqc module
- Pull request#47avani-bhojwani2025-08-26 05:52
- Issue comment#45nf-core-bot2025-07-08 11:38Important! Template update for nf-core/tools v3.3.1
- Pull request#46nf-core-bot2025-07-08 11:38
- Pull request#45nf-core-bot2025-07-08 11:38
- Pull request#45nf-core-bot2025-06-03 11:01
- Pull request#44vagkaratzas2025-05-27 08:03
- Pull request#44vagkaratzas2025-05-26 19:43
- Pull request#43vagkaratzas2025-05-26 15:47
- Pull request#43vagkaratzas2025-05-23 09:48
- Pull request#42vagkaratzas2025-05-12 12:17
- Pull request#42nf-core-bot2025-04-30 12:26
- Issue comment#41devjanee2025-04-10 12:02SPAdes / Trinity running out of space still
- Issue#41devjanee2025-04-08 12:17SPAdes / Trinity running out of space still
- Issue#40jen-reeve2025-03-25 00:17JSON schema: Denovotranscript
- Issue comment#38ibwoo2025-02-11 03:38Using Trinity with grid_exec
- Issue comment#38ibwoo2025-02-11 03:20Using Trinity with grid_exec
- Issue#39pansapiens2025-02-11 02:43Consider splitting Trinity stages into separate tasks
- Issue#38avani-bhojwani2025-01-31 04:34Using Trinity with grid_exec
- Pull request#37avani-bhojwani2025-01-31 01:20
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 20 stars here means stars gained during the window, not the repo's star count.