nf-core Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
active 2023-08-16 → 2026-07-24 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 1074 days from 2023-08-16 to 2026-07-24. Pushes: 436 total, peak 20 in a day. Pull requests: 267 total, peak 14 in a day. Issues: 151 total, peak 12 in a day. Comments: 710 total, peak 37 in a day. Stars: 60 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| sateeshperi | 808 | 252 | 151 | 212 |
| maxulysse | 148 | 13 | 5 | 58 |
| GallVp | 127 | 12 | 8 | 52 |
| github-actions[bot] | 119 | 0 | 0 | 119 |
| Emiller88 | 101 | 45 | 21 | 15 |
| edmundmiller | 84 | 28 | 16 | 13 |
| eduard-watchmaker | 58 | 35 | 2 | 12 |
| mashehu | 55 | 10 | 1 | 22 |
| nf-core-bot | 45 | 16 | 18 | 11 |
| ewels | 34 | 3 | 5 | 19 |
| jfy133 | 30 | 0 | 0 | 20 |
| Shaun-Regenbaum | 27 | 2 | 7 | 12 |
| bentsherman | 25 | 2 | 1 | 14 |
| FelixKrueger | 23 | 7 | 4 | 2 |
| bounlu | 20 | 4 | 4 | 10 |
| dcarrillox | 13 | 1 | 3 | 5 |
| gevro | 12 | 0 | 0 | 5 |
| adamrtalbot | 11 | 0 | 0 | 8 |
| fbnrst | 11 | 4 | 3 | 1 |
| awgymer | 7 | 0 | 0 | 3 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#598nf-core-bot2026-03-11 21:50refactor: migrate to nf-core-utils plugin
- Issue#596bounlu2026-02-26 05:22`--run_targeted_sequencing` does not work
- Issue comment#593bentsherman2026-01-22 20:47Preview: Record types
- Issue comment#593bentsherman2026-01-22 06:08Preview: Record types
- Pull request#593bentsherman2026-01-13 03:37
- Issue comment#575kmkappa2025-12-19 14:11—skip_deduplication flag does not activate duplication skipping
- Issue comment#592eduard-watchmaker2025-12-18 20:52Add fq2bam to methylseq
- Issue comment#592eduard-watchmaker2025-12-18 20:33Add fq2bam to methylseq
- Issue comment#592eduard-watchmaker2025-12-18 20:27Add fq2bam to methylseq
- Issue#575sateeshperi2025-12-18 12:11—skip_deduplication flag does not activate duplication skipping
- Issue comment#575sateeshperi2025-12-18 12:11—skip_deduplication flag does not activate duplication skipping
- Issue#579sateeshperi2025-12-18 12:10--rrbs samtools sort bam incorrectly named with deduplicated prefix
- Issue comment#579sateeshperi2025-12-18 12:10--rrbs samtools sort bam incorrectly named with deduplicated prefix
- Releasesateeshperi2025-12-12 10:48Tapus Maximus
- Pull request#585sateeshperi2025-12-12 10:45
- Issue comment#585sateeshperi2025-12-12 10:23Dev -> Master v4.2.0
- Issue comment#589sateeshperi2025-12-11 04:20Workflow exits after TrimGalore with “successful” status but no alignments produced
- Issue#588sansense2025-12-09 19:10conflicting advice in usage document
- Issue#588sansense2025-12-09 19:10conflicting advice in usage document
- Pull request#586sateeshperi2025-12-09 05:34
- Issue comment#585eduard-watchmaker2025-12-09 05:30Dev -> Master v4.2.0
- Issue comment#585sateeshperi2025-12-09 03:42Dev -> Master v4.2.0
- Issue comment#580tylerstahl2025-12-08 14:49--aligner bwameth samtools sort bam incorrectly named with deduplicated prefix
- Pull request#584sateeshperi2025-12-08 02:00
- Issue comment#583github-actions[bot]2025-12-07 06:31Fix rrbs and skip_dedup publishing
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 60 stars here means stars gained during the window, not the repo's star count.