Pipeline for identifying, annotation, and quantifying phage sequences in (meta)-genomic sequences.
active 2023-08-15 → 2026-07-28 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 1079 days from 2023-08-15 to 2026-07-28. Pushes: 102 total, peak 12 in a day. Pull requests: 69 total, peak 4 in a day. Issues: 80 total, peak 36 in a day. Comments: 81 total, peak 14 in a day. Stars: 8 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| CarsonJM | 242 | 84 | 41 | 27 |
| nf-core-bot | 50 | 17 | 25 | 8 |
| sateeshperi | 38 | 0 | 0 | 18 |
| jfy133 | 22 | 0 | 0 | 15 |
| adamrtalbot | 11 | 0 | 1 | 6 |
| mashehu | 5 | 1 | 0 | 2 |
| harper357 | 4 | 0 | 1 | 1 |
| Emiller88 | 4 | 0 | 0 | 2 |
| FriederikeHanssen | 3 | 0 | 0 | 1 |
| edmundmiller | 2 | 0 | 0 | 1 |
| maxulysse | 1 | 0 | 0 | 0 |
| Joon-Klaps | 1 | 0 | 1 | 0 |
| Sarani-NS | 1 | 0 | 0 | 0 |
| Heime-Jorgen | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue#130Heime-Jorgen2026-06-16 01:11[K-Lean] Lean 4 sorry-free contracts for phage genomics — GCContent, ShannonEntropy, LogisticGrowth
- Issue#129Sarani-NS2025-06-12 13:42No fasta input implemented?
- Issue#127harper3572025-05-01 00:03iPHOP downloads the wrong database for its current version
- Pull request#126nf-core-bot2025-04-30 12:27
- Pull request#122nf-core-bot2025-04-30 12:27
- Issue#125harper3572025-04-25 20:03Running geNomad and COBRA fails because of altered FASTA sequence name
- Issue comment#123harper3572025-04-24 21:35COBRA options schema are listed as strings when they should be ints
- Pull request#124harper3572025-04-24 21:33
- Pull request#122nf-core-bot2025-01-27 15:24
- Pull request#121nf-core-bot2025-01-27 15:24
- Issue comment#120nf-core-bot2025-01-20 15:16Important! Template update for nf-core/tools v3.1.1
- Pull request#120nf-core-bot2025-01-20 15:16
- Pull request#121nf-core-bot2025-01-20 15:16
- Issue comment#119nf-core-bot2024-12-20 13:56Important! Template update for nf-core/tools v3.1.0
- Pull request#119nf-core-bot2024-12-20 13:56
- Pull request#120nf-core-bot2024-12-20 13:56
- Issue comment#118nf-core-bot2024-12-12 11:24Important! Template update for nf-core/tools v3.0.2
- Pull request#118nf-core-bot2024-12-12 11:24
- Pull request#119nf-core-bot2024-12-12 11:24
- Issue comment#117nf-core-bot2024-10-11 12:34Important! Template update for nf-core/tools v3.0.1
- Pull request#117nf-core-bot2024-10-11 12:34
- Pull request#118nf-core-bot2024-10-11 12:34
- Issue comment#116nf-core-bot2024-10-09 11:44Important! Template update for nf-core/tools v3.0.0
- Pull request#116nf-core-bot2024-10-09 11:44
- Issue comment#115nf-core-bot2024-10-08 12:33Important! Template update for nf-core/tools v2.14.1
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 8 stars here means stars gained during the window, not the repo's star count.